HHsearch results for GI: 254780317 and protein with PDBid: 3cmq_A
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A*
Probab=100.00 E-value=0 Score=632.31 Aligned_cols=242 Identities=32% Similarity=0.668 Sum_probs=223.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CEEECC-CEEECHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 00112321226742389999999999998739--------876237-234158898886189887733163312775056
Q gi|254780317|r 102 SLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMG--------FALEEG-SDIETDYYNFAALNFPDDHPARQMHDTFFVPGI 172 (366)
Q Consensus 102 TLP~~~~~~~~G~~HPItqvi~eI~~IF~~lG--------F~v~eG-PEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~ 172 (366)
++| |+....|+.|||++++++|++||.+|| |++.+| |+|||+||||||||+|+||||||||||||++
T Consensus 36 ~~~--g~~l~~~~~HPl~~~~~~i~~~F~~~g~~~~~~~~f~~~d~~~~vet~~~NFD~L~~P~dHPaRd~~DTfyl~-- 111 (415)
T 3cmq_A 36 TRV--GRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN-- 111 (415)
T ss_dssp TTT--TCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS--
T ss_pred HHC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEC--
T ss_conf 305--8666678999689999999999987386635787621258999732741420222789998756743416768--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEEC----------------------
Q ss_conf 6655632244676305555430363122541057647454-42137810020057861----------------------
Q gi|254780317|r 173 AGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVS---------------------- 229 (366)
Q Consensus 173 ~~~~~~lLRthTS~vQiR~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~---------------------- 229 (366)
++.|||||||++|+|.|.++.+|+ +++|+|||+|+ |+||+|+|||+||+.|.
T Consensus 112 ---~~~lLRthts~~q~~~l~~~~~~~--~~~G~vyR~d~iD~~h~~~FhQ~eg~~v~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
T 3cmq_A 112 ---RTHMLRAHTSAHQWDLLHAGLDAF--LVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSS 186 (415)
T ss_dssp ---SSEEECSSGGGGHHHHHHTTCSEE--EEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCC
T ss_pred ---CCCCCCCCCCHHHHHHHHCCCCCE--EEECCCCCCCCCCCCCCCEEEECCEEEECCCCHHHCCCCCCCCCCCCCCCC
T ss_conf ---987046889888999985489934--764777157987764441123110466314000001234443222112333
Q ss_pred -------------CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEEC
Q ss_conf -------------7866899988999999997088866264542388985266103678750588042246883489845
Q gi|254780317|r 230 -------------DSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILG 296 (366)
Q Consensus 230 -------------~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g 296 (366)
.++++.||||+|+.|++.+|| .++++||||+||||||||+|+||.| +++|+||+|
T Consensus 187 ~~~h~~e~~~~e~~~~~~~dLKg~le~ll~~l~~-~~~~~r~~~~~fPft~Ps~e~~I~~-----------~~~wiei~g 254 (415)
T 3cmq_A 187 RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFG-DELEIRWVDCYFPFTHPSFEMEINF-----------HGEWLEVLG 254 (415)
T ss_dssp CCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEEEEEETTEEEEEEEEEEE-----------TTEEEEEEE
T ss_pred CCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCEEEEEEE-----------CCCCCEEEE
T ss_conf 3432100012211121088899999999999679-8757998407898767632799998-----------885666878
Q ss_pred CCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHCCHHHHHHC---------CCCCC-CCCCCCCCCC
Q ss_conf 7563888998569880003799631344699799738970587663588888744---------89844-6884145889
Q gi|254780317|r 297 CGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHY---------GFSPL-DIPPLFSRLA 366 (366)
Q Consensus 297 ~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~~~~~d~rfl~qf---------~~~~~-~~~~~~~~~~ 366 (366)
|||+||+||+++|++. ++|||||+||||+||++|||+|||+||++|+|||+|| .|.|+ .+|+++||||
T Consensus 255 ~G~vhP~Vl~~~g~~~--~~g~AFGlGleRlaml~~~i~DiR~~~~~D~rfl~Qf~~~~~~~~~~y~~~SkyP~v~RDlS 332 (415)
T 3cmq_A 255 CGVMEQQLVNSAGAQD--RIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDIS 332 (415)
T ss_dssp EEEECHHHHHHTTCTT--EEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCCCEEEEEE
T ss_pred EECCCHHHHHHCCCCC--CEEEEEEEECCHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCEECEEE
T ss_conf 6025799998659987--65899987325788876164248888632499998613123443346776234898200049