HHsearch results for GI: 254780317 and protein with PDBid: 3i7f_A
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.06 E-value=4.3e-09 Score=85.91 Aligned_cols=195 Identities=19% Similarity=0.285 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23899999999999987398762372341588988861898877331633127750566655632244676305555430
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES 194 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~ 194 (366)
+---++++..|+++|.+-||..++-|-+-.. .| -.|++..-+=|+ +.+.-|+ +||-.---+.-
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--------~~--eg~~~~f~~~~~-----~~~~yL~--~SPel~~k~ll 306 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGC--------SS--EGGSNIFEVKYF-----DRKAYLA--QSPQLYKQMAI 306 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------------------------CCBC--SCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCEECCC--------CC--CCCCCCCCCCCC-----CHHHHHH--HHHHHHHHHHH
T ss_conf 9999999999999999779989888721236--------76--765560001111-----1266763--32678999998
Q ss_pred CCCEEEEEECCCCCCCCC-CC-CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH------------------------
Q ss_conf 363122541057647454-42-1378100200578617866899988999999997------------------------
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS-DS-THSPMFHQIEGLVVSDSATIANLRWVLESFCKSF------------------------ 248 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~-D~-tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~------------------------ 248 (366)
..-==|++.+|+|||++. ++ .|.|+|.|+|--+.-.+ .+.++...++.+++.+
T Consensus 307 ~~g~~rVfeI~~~FR~E~~~t~rHlpEFT~LE~e~a~~~-~~~d~m~~~e~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 385 (548)
T 3i7f_A 307 MGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE-NYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDL 385 (548)
T ss_dssp TTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSS-CTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCC
T ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC
T ss_conf 626632344340566454555556875155010077898-8999999999999999999876466543210002553101
Q ss_pred ---------------------------------------------CCCCCCEE-EEEECCCCC-CCCCC-------EEEE
Q ss_conf ---------------------------------------------08886626-454238898-52661-------0367
Q gi|254780317|r 249 ---------------------------------------------FEVSSLQM-RFRPSFFPF-TEPSF-------EVDV 274 (366)
Q Consensus 249 ---------------------------------------------fg~~~~~~-r~rp~~fPf-tePs~-------Evdv 274 (366)
++..-+=+ +|=.+--|| +-|.. -.|+
T Consensus 386 ~~~~~~~it~~eai~~l~~~~~~~~~~~d~~~~~e~~l~~~i~~~~~~~~~~v~~~P~~~~pf~~~~~~~d~~~a~rfdL 465 (548)
T 3i7f_A 386 IYRPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDV 465 (548)
T ss_dssp CCCSCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEE
T ss_pred CCCCHHHCCHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCEEEEEEE
T ss_conf 35615435699999999972322352110163899998888887517898899487264297666889999683468998
Q ss_pred EEECCCCEEEECCCCCEEEEECCC--CCCHHHH----HHCCCCCCCEE------------EEEEECCHHHHHHHHCCCCC
Q ss_conf 875058804224688348984575--6388899----85698800037------------99631344699799738970
Q gi|254780317|r 275 RCSFSDGIIKFDEGTEWMEILGCG--MVDPRVL----RGVGIDPDIYQ------------GFAWGMGLDRIAMLKYGMPD 336 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~WiEi~g~G--m~~p~vl----~~~g~d~~~~~------------g~AfG~G~eRlaml~~gi~d 336 (366)
.+ +-+||+|++ .-+|+.+ +..|+|++.+. .-.||+|+|||+|+..|.++
T Consensus 466 ~i-------------~G~Ei~nG~~rl~d~~~~~~r~~~~g~~~~~~~~yl~al~~G~PP~gG~glGlDRLvmll~g~~~ 532 (548)
T 3i7f_A 466 FV-------------RGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPN 532 (548)
T ss_dssp EE-------------TTEEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSC
T ss_pred EC-------------CCEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCC
T ss_conf 72-------------98897164554188999999999859998999999999657999861465389999999818983
Q ss_pred HHHH
Q ss_conf 5876
Q gi|254780317|r 337 VREF 340 (366)
Q Consensus 337 iR~~ 340 (366)
||+-
T Consensus 533 Irdv 536 (548)
T 3i7f_A 533 IRKV 536 (548)
T ss_dssp GGGG
T ss_pred HHEE
T ss_conf 7758