HHsearch results for GI: 254780317 and protein with PDBid: 3ikl_A
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=94.42 E-value=0.3 Score=28.53 Aligned_cols=143 Identities=10% Similarity=-0.084 Sum_probs=81.0
Q ss_pred CCCCCCCCCCHHH----HHHHH--CCCEEEEEECCCCCCCCCC-C------CCCCCCCCCCEEE-ECCCC---CHHHHHH
Q ss_conf 6322446763055----55430--3631225410576474544-2------1378100200578-61786---6899988
Q gi|254780317|r 177 HKLLRTHTSPVQI----RVMES--QDLPIKVIVPGKTYRRDSD-S------THSPMFHQIEGLV-VSDSA---TIANLRW 239 (366)
Q Consensus 177 ~~lLRthTS~vQi----R~m~~--~~pP~~~~~~GrvyR~d~D-~------tH~~~FhQ~egl~-v~~~i---~~~~lk~ 239 (366)
..-||.-|-.... +.+.. .+.|+++.-+|++||++-+ . ...-+|.|.|.-+ ++.+- .+...+.
T Consensus 146 ~~yLRPetaqGif~nFkn~~~~~rkkLPfgiaQIGk~FRnEisei~PR~GL~RvREFtQ~D~e~F~~P~~~~e~~~~~~~ 225 (459)
T 3ikl_A 146 RGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLR 225 (459)
T ss_dssp TTB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCEEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 24566223451588799999853778986677850111465465567777303343472058999687246899999999
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHH-HCC--------C
Q ss_conf 9999999970888662645423889852661036787505880422468834898457563888998-569--------8
Q gi|254780317|r 240 VLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLR-GVG--------I 310 (366)
Q Consensus 240 ~l~~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~-~~g--------~ 310 (366)
....|++. ||.+.-.+||+..--.+ -....|+.+.. .-+|.|+.|+---.-.-|. ... .
T Consensus 226 ~~~~~~~~-lGi~~~~lr~~~h~~~~--a~~~~d~e~~~---------~~g~~E~~gia~r~d~dL~~h~~~s~~~~~~~ 293 (459)
T 3ikl_A 226 HRLQWWRK-FAMSPSNFSSSDCQDEE--GRKGNKLYYNF---------PWGKELIETLWNLGDHELLHMYPGNVSKLHGR 293 (459)
T ss_dssp HHHHHHHH-HCSSGGGEEEEEECCSS--SSCEEEEEEEC---------SSCEEEEEEEEEEETHHHHHHSCSCSSSSCCB
T ss_pred HHHHHHHH-HCCCHHHEEECCCCCCC--CCCHHHHCCCC---------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999-68982444653455211--23111213665---------77898752422200155200024554333331
Q ss_pred CCCC-E--EEEEEECCHHHHHHHH
Q ss_conf 8000-3--7996313446997997
Q gi|254780317|r 311 DPDI-Y--QGFAWGMGLDRIAMLK 331 (366)
Q Consensus 311 d~~~-~--~g~AfG~G~eRlaml~ 331 (366)
|+.. | ..+--..|++|+....
T Consensus 294 d~~~~~~p~vie~s~gldr~l~a~ 317 (459)
T 3ikl_A 294 DGRKNVVPCVLSVNGDLDRGMLAY 317 (459)
T ss_dssp SSSCBCCCEEEEEEEEHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 113443321687432110678788