HHsearch results for GI: 254780317 and protein with PDBid: 3lss_A
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.05 E-value=0.027 Score=36.23 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH------HH
Q ss_conf 999999999873987623723415889888618988773316331277505666556322446763055554------30
Q gi|254780317|r 121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM------ES 194 (366)
Q Consensus 121 vi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m------~~ 194 (366)
.++-..|+..+-||+.+.-|.+-...--+..=..| +..-|.|++... ...+-=.-||-|.+=.| ..
T Consensus 214 Li~y~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~lp-----~f~~~~y~i~~~---~~~l~Li~TaEvpl~~~~~~eil~~ 285 (484)
T 3lss_A 214 LVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLS-----QFDEELYQVSGD---GDKKYLIATSEMPIAAYHRGRWFTE 285 (484)
T ss_dssp HHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHH-----HHHHTCCEEESS---SSCEEECSSTHHHHHHHTTTCEESC
T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCCCC-----CCHHHCEEEECC---CCCEEEECCCCCCHHHHHHHCEEHH
T ss_conf 99999997651697441486322222037645776-----520104031026---7642462246663666664301023
Q ss_pred CCCEEEEEECCCCCCCCC-----CC---CCCCCCCCCCEEEECCC---CCH---HHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 363122541057647454-----42---13781002005786178---668---99988999999997088866264542
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS-----DS---THSPMFHQIEGLVVSDS---ATI---ANLRWVLESFCKSFFEVSSLQMRFRP 260 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~-----D~---tH~~~FhQ~egl~v~~~---i~~---~~lk~~l~~~~~~~fg~~~~~~r~rp 260 (366)
...|+|+++.+.|||++. |. .+.|+|..||-+++-+. -+. ..|....+.+++.+ | +-||-
T Consensus 286 ~~LP~k~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L-~-----lpyrv 359 (484)
T 3lss_A 286 LKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSL-G-----LPYRV 359 (484)
T ss_dssp CSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHH-T-----CCEEE
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC-C-----CCEEE
T ss_conf 22876563018888854434466778705761134489999846861222899999999999999854-8-----70699
Q ss_pred CCCCCCCCC----CEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCC------------C--CEEEEEEEC
Q ss_conf 388985266----1036787505880422468834898457563888998569880------------0--037996313
Q gi|254780317|r 261 SFFPFTEPS----FEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDP------------D--IYQGFAWGM 322 (366)
Q Consensus 261 ~~fPftePs----~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~------------~--~~~g~AfG~ 322 (366)
-.-|=.+=+ --.||..|..+ .+.|.||.-|-...-=.-+..+|-- . .++--+=|+
T Consensus 360 v~~~sgdlg~~a~~k~DiE~W~P~-------~~~y~EvsS~Snc~DyQsrRl~iry~~~~~~~~~~~~~~~~HtlNgt~~ 432 (484)
T 3lss_A 360 VNICSGALNNAAAKKYDLEAWFPA-------SGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLC 432 (484)
T ss_dssp EECCTTTCCSSCSEEEEEEEEETT-------TTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEEEEEEEE
T ss_pred EEECCCCCCCCHHHEEEEEEEECC-------CCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 740587778223346888988667-------7975778774255237664140501576555555677504575106300
Q ss_pred CHHHHH
Q ss_conf 446997
Q gi|254780317|r 323 GLDRIA 328 (366)
Q Consensus 323 G~eRla 328 (366)
-+.|+.
T Consensus 433 A~~R~l 438 (484)
T 3lss_A 433 AITRTM 438 (484)
T ss_dssp EHHHHH
T ss_pred HHHHHH
T ss_conf 887899