RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase,
alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
(366 letters)
>gnl|CDD|30366 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 387 bits (995), Expect = e-108
Identities = 153/345 (44%), Positives = 219/345 (63%), Gaps = 18/345 (5%)
Query: 10 EVERIRSSLYNSIASVTD-MDSLNAIRVATLGRKGSISSLLKDLKNL-DSQQVSARGAIL 67
+ R+ +I +D + +L ++V LG+KG ++ LLK L L ++ GA++
Sbjct: 5 ALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALI 64
Query: 68 NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127
N+LK ++ I+ + ++E+++ + +DV+LP + G +HP+TQ I+E+
Sbjct: 65 NELKKEVEDAITELTPELEAAGLWERLAFEKIDVTLP--GRRIYPGSLHPLTQTIEEIED 122
Query: 128 IFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPV 187
IF+ MGF EG +IETD+YNF ALN P DHPAR M DTF++ + LLRTHTSPV
Sbjct: 123 IFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLK--DDREKLLLRTHTSPV 180
Query: 188 QIRVMESQ-DLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFC 245
Q R + +PIK+ PG+ YR D+ D+THSP FHQIEGLVV + + A+L+ LE F
Sbjct: 181 QARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240
Query: 246 KSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL 305
K FF +++RFRPS+FPFTEPS EVDV C W+EILGCGMV P VL
Sbjct: 241 KKFFGED-VKVRFRPSYFPFTEPSAEVDVYC---------PGCGGWLEILGCGMVHPNVL 290
Query: 306 RGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEH 350
VGIDP+ Y GFA+G+GL+R+AMLKYG+PD+R+ + D+R++
Sbjct: 291 EAVGIDPEEYSGFAFGLGLERLAMLKYGIPDIRDLYENDLRFLRQ 335
>gnl|CDD|144850 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 243
Score = 355 bits (913), Expect = 1e-98
Identities = 122/256 (47%), Positives = 170/256 (66%), Gaps = 15/256 (5%)
Query: 98 SVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDD 157
DV+LP G +HP+T+V++E+ IF+ MGF EG ++E+D+YNF ALN P D
Sbjct: 1 PYDVTLPG--RRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQD 58
Query: 158 HPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM-ESQDLPIKVIVPGKTYRRDS-DST 215
HPAR M DTF++ + LLRTHT+PVQ R + E PIK+ G+ +RRD D+T
Sbjct: 59 HPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTLAEKNKPPIKIFSIGRVFRRDQVDAT 118
Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVR 275
H P FHQ+EGLVV ++ + A+L+ VLE F + FF +++RFRPS+FPFTEPS EVDV
Sbjct: 119 HLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFGF-EVKVRFRPSYFPFTEPSAEVDVY 177
Query: 276 CSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMP 335
C +G W+EI G GMV P VL VGID + Y GFA+G+G++R+AMLKYG+
Sbjct: 178 C---------CKGGGWIEIGGAGMVHPNVLEAVGID-EDYPGFAFGLGVERLAMLKYGID 227
Query: 336 DVREFFGADVRWIEHY 351
D+R+ + D+R++ +
Sbjct: 228 DIRDLYENDLRFLRQF 243
>gnl|CDD|29807 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer..
Length = 218
Score = 306 bits (785), Expect = 7e-84
Identities = 122/232 (52%), Positives = 151/232 (65%), Gaps = 15/232 (6%)
Query: 116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGG 175
HP+ +VI+E+ IF+ MGF EG ++ETD+YNF ALN P DHPAR M DTF+ I
Sbjct: 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFY---INDP 57
Query: 176 KHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATI 234
LLRTHTS VQ R + PI++ G+ YR D D+TH P FHQIEGLVV T
Sbjct: 58 ARLLLRTHTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTF 117
Query: 235 ANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEI 294
A+L+ LE F K F ++RFRPS+FPFTEPSFEVDV C W+EI
Sbjct: 118 ADLKGTLEEFAKELFG-PITKVRFRPSYFPFTEPSFEVDVYC---------PGCLGWLEI 167
Query: 295 LGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVR 346
LGCGMV P VL GID + Y GFA+G+GL+R+AMLKYG+PD+R F+ D+R
Sbjct: 168 LGCGMVRPEVLENAGIDEE-YSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218
>gnl|CDD|37994 KOG2783, KOG2783, KOG2783, Phenylalanyl-tRNA synthetase
[Translation, ribosomal structure and biogenesis].
Length = 436
Score = 134 bits (338), Expect = 4e-32
Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 67/296 (22%)
Query: 111 HRGRIHPVT----QVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDT 166
H+ HP+ ++ D + ++ E S + T Y NF +L FP DH +R DT
Sbjct: 67 HQKESHPLGILRQRIEDYFYKTYRNLFSIFENESPVVTTYQNFDSLLFPADHVSRSKSDT 126
Query: 167 FFVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEG 225
++V LR HTS Q + Q +V G YRRD DSTH P+FHQ+EG
Sbjct: 127 YYV-----NHTHCLRAHTSAHQHELF--QKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEG 179
Query: 226 LVV------------------------------------SDSATIA---NLRWVLESFCK 246
+ + + AT +L+ LE C
Sbjct: 180 VRLWSKDELFGKKPDGKNVAELFSGSSATLRSPNKQEKHTLEATKLAEQHLKQTLEGLCD 239
Query: 247 SFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLR 306
F ++ R+ ++FPFT PS+E+++ F EW+E+LGCG++ R+L+
Sbjct: 240 ELFG-KEVEYRWVDAYFPFTHPSWELEI--YFKG---------EWLEVLGCGVMRQRLLK 287
Query: 307 GVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLF 362
G++ I G+A+G+GL+R+AML + +PD+R F+ D R+++ FSP I P F
Sbjct: 288 RAGLNNYI--GWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQ--FSPGKIEPKF 339
>gnl|CDD|37995 KOG2784, KOG2784, KOG2784, Phenylalanyl-tRNA synthetase, beta
subunit [Translation, ribosomal structure and
biogenesis].
Length = 483
Score = 129 bits (325), Expect = 1e-30
Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 53/277 (19%)
Query: 109 PCHRGRIHPVTQVIDEVTCIFMDMGFA-LEEGSDIETDYYNFAALNFPDDHPARQMHDTF 167
P G +HP+ +V +E IF +MGF+ + + +E+ ++NF AL P HPAR HDTF
Sbjct: 205 PPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTF 264
Query: 168 FV--PGIA----------------GGKHK----------------LLRTHTSPVQIRVM- 192
F+ P + G + +LRTHT+ V R++
Sbjct: 265 FLKDPATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLY 324
Query: 193 ---ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248
+ P K + +R ++ D+TH FHQ+EG++ T+ +L +L F F
Sbjct: 325 RLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEF---F 381
Query: 249 FEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGV 308
++ + +RF+P++ P+TEPS E+ S+ G+ K W+E+ GM P +L +
Sbjct: 382 TKLGATNLRFKPAYNPYTEPSMEIF---SYHHGLFK------WVEVGNSGMFRPEMLLPM 432
Query: 309 GIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADV 345
G+ D+ AWG+ L+R M+KYG+ ++R G V
Sbjct: 433 GLPMDV-VVLAWGLSLERPTMIKYGIQNIRWLKGHKV 468
>gnl|CDD|111764 pfam02912, Phe_tRNA-synt_N, Aminoacyl tRNA synthetase class II,
N-terminal domain.
Length = 73
Score = 63.7 bits (156), Expect = 8e-11
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 23 ASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARK 82
A+ +D+ +L AIRV LG+KG ++ LLK L L ++ GA++N+ K + + +K
Sbjct: 1 AAASDLKALEAIRVKYLGKKGPLTELLKGLGKLSPEERPKVGALINEAKEAVEEALEEKK 60
Query: 83 DFIRNQLIFEQI 94
+ + ++
Sbjct: 61 AALEEAELNARL 72
>gnl|CDD|32207 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 54.2 bits (130), Expect = 5e-08
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 191 VMESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248
+++ +D P+K+ + +RR+ D++H +H +VV + T+ + + V E + F
Sbjct: 200 ILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259
Query: 249 -FEVSSLQMRFRPS------FFPFTEP---SFEVDVRCSFSDGIIKFDEGTEWMEILGCG 298
FE + RFRP + P T+ ++ + S W+EI G
Sbjct: 260 GFE----KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEK------YSDGWIEIATFG 309
Query: 299 MVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDI 358
+ P L GID Y G+G++R+AM+ +G DVR I + S DI
Sbjct: 310 LYSPIALAEYGID---YPVMNLGLGVERLAMILHGADDVRSMVYPQ---IYEWRLSDRDI 363
>gnl|CDD|29821 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate..
Length = 322
Score = 32.1 bits (73), Expect = 0.27
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 292 MEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLKYG 333
EI+G D L + G+DP+ ++ + +G+GL+R+ M G
Sbjct: 248 GEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLG 307
Query: 334 MPDVRE 339
+ ++RE
Sbjct: 308 LDNIRE 313
>gnl|CDD|30367 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 30.5 bits (69), Expect = 0.65
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 290 EWMEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLK 331
EI+G D +L + G+DP+ Y+ + +G+GL+R+ M
Sbjct: 355 GGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYI 414
Query: 332 YGMPDVRE 339
G+ ++RE
Sbjct: 415 LGLDNIRE 422
>gnl|CDD|143920 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 341
Score = 29.9 bits (68), Expect = 1.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 320 WGMGLDRIAMLKYGMPDVRE 339
G+GLDR+ ML G+ +RE
Sbjct: 313 IGLGLDRLVMLLTGLESIRE 332
>gnl|CDD|37422 KOG2211, KOG2211, KOG2211, Predicted Golgi transport complex 1
protein [Intracellular trafficking, secretion, and
vesicular transport].
Length = 797
Score = 29.2 bits (65), Expect = 1.6
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 10 EVERIRS---SLYNSIASVTDMDSLNAIRVAT--LGRKGSISSLLKDLKNL-DSQQVSAR 63
E++RI++ Y I T + + + VA L R G L K L +L S V A
Sbjct: 129 EIKRIKNDNKEPYKIIWLKTMVLT--RLHVAENLLRRSGRALELSKKLASLNSSMVVDAT 186
Query: 64 GA--ILNQLKVDISGKISARKDFIRNQLIFEQISSQSV 99
A LN+L + + D I +L+F SS V
Sbjct: 187 RAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEV 224
>gnl|CDD|37096 KOG1885, KOG1885, KOG1885, Lysyl-tRNA synthetase (class II)
[Translation, ribosomal structure and biogenesis].
Length = 560
Score = 29.1 bits (65), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 320 WGMGLDRIAMLKYGMPDVRE--FFGA 343
WGMG+DR+ ML ++RE F A
Sbjct: 528 WGMGIDRLVMLLTDSNNIREVLLFPA 553
>gnl|CDD|31383 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 28.2 bits (63), Expect = 3.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 320 WGMGLDRIAMLKYGMPDVRE 339
G+G+DR+ ML P +R+
Sbjct: 472 LGIGIDRLVMLLTNSPSIRD 491
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea..
Length = 778
Score = 27.9 bits (63), Expect = 4.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 294 ILGCGMVDPRVLRGVGIDPDIYQ---GFAWGMGLDRIA--MLKYGMP 335
+LG G V R LR +GI P +Y G A +GL+RI M + G+
Sbjct: 233 LLGIGGV--RALRALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLS 277
>gnl|CDD|37720 KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 455
Score = 27.6 bits (61), Expect = 5.2
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 172 IAGGKHKLLRTHTSPVQI------RVMESQDLPIKVIVPGKTYRRDSDST---------- 215
+ GG K L T+ + +E LPIK + + +R ++ S
Sbjct: 235 LDGGDEKYL-IATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRV 293
Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFR 259
H F ++E V++ + + + + F++ SL + +R
Sbjct: 294 HQ--FEKVEQFVITGPEDSWEMLEEMINNQEEFYQ--SLGLPYR 333
>gnl|CDD|35691 KOG0470, KOG0470, KOG0470, 1,4-alpha-glucan branching enzyme/starch
branching enzyme II [Carbohydrate transport and
metabolism].
Length = 757
Score = 27.6 bits (61), Expect = 5.7
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 309 GIDPDIY-----QGFAWGMGLDRIAMLKYGMPDVREFFGADVR-WIEHYGF 353
GID +Y +G+ + Y P V F +++R W+ Y
Sbjct: 349 GIDNSVYFHSGPRGYHN---SWCSRLFNYNHPVVLRFLLSNLRWWVTEYHV 396
>gnl|CDD|38725 KOG3516, KOG3516, KOG3516, Neurexin IV [Signal transduction
mechanisms].
Length = 1306
Score = 27.2 bits (60), Expect = 6.6
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 252 SSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTE 290
SSL RF + + + SDG++ EG +
Sbjct: 186 SSLLYRFHRKLMSSLKDVISLKFKTMQSDGVLLHGEGQQ 224
>gnl|CDD|35776 KOG0556, KOG0556, KOG0556, Aspartyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 533
Score = 26.8 bits (59), Expect = 8.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 321 GMGLDRIAMLKYGMPDVREF 340
G+GL+R+ ML G+ ++R+
Sbjct: 502 GIGLERVVMLYLGLNNIRKT 521
>gnl|CDD|34907 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 26.9 bits (59), Expect = 8.6
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 68 NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127
L S + ++ +L ++QI I + + I E+
Sbjct: 162 ESLSSLGSQQTLQQQGLSNEELEYQQILITE------------RDEEIKNLARGIYELNE 209
Query: 128 IFMDMGFAL-EEGSDIETDYYNFAALNF 154
IF D+G + E+G ++ +N +
Sbjct: 210 IFRDLGSLVGEQGELVDRIDFNIENTSD 237
>gnl|CDD|37654 KOG2443, KOG2443, KOG2443, Uncharacterized conserved protein
[Function unknown].
Length = 362
Score = 26.8 bits (59), Expect = 8.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 184 TSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPM 219
+ V + V S D PIK++ P K +++ M
Sbjct: 217 GTNVMVTVATSLDAPIKLVFPQKLLFPGLTASNFSM 252
>gnl|CDD|29820 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate..
Length = 329
Score = 27.1 bits (60), Expect = 9.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 320 WGMGLDRIAMLKYGMPDVRE 339
G+G+DR+ ML +R+
Sbjct: 301 LGIGIDRLVMLLTDSNSIRD 320
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,676,378
Number of extensions: 256126
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 25
Length of query: 366
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,210,882
Effective search space: 1141149022
Effective search space used: 1141149022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)