HHsearch alignment for GI: 254780318 and conserved domain: CHL00068

Probab=100.00  E-value=0  Score=326.23  Aligned_cols=114  Identities=45%  Similarity=0.703  Sum_probs=112.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHH
Q ss_conf             98775665556899899997413156452369999999999999987469988999999999867799997189--9999
Q gi|254780318|r    1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDL--NYSQ   78 (123)
Q Consensus         1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~--sYS~   78 (123)
T Consensus         1 M~Rvk~g~~~~~rrkkilk~akGfrG~~~~~~r~A~~~v~kAl~yayr~Rk~kKr~fR~LWI~RINAa~r~~gl~~sYS~   80 (117)
T CHL00068          1 MTRVKRGYIARKRRKKILLFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRLWITRINAAIREYGVSYSYSK   80 (117)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99865749999999999998061476765416999999999999998739888679999999999999998388154999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             999999629864689999997419899999999999
Q gi|254780318|r   79 FINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSR  114 (123)
Q Consensus        79 fi~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak  114 (123)
T Consensus        81 fi~~L~~~~I~LnRKvLs~LAi~dp~~F~~lv~~v~  116 (117)
T CHL00068         81 FIHNLYKNQILLNRKILAQIAILDRNCFYMISNEII  116 (117)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999918848499999999709899999999871