Query gi|254780318|ref|YP_003064731.1| ribosomal protein L20 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 121 out of 1268
Neff 4.5
Searched_HMMs 23785
Date Mon May 30 08:08:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780318.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_N 50S ribosomal protein L 100.0 0 0 336.7 11.3 118 1-118 1-118 (118)
2 2j01_U 50S ribosomal protein L 100.0 0 0 333.7 10.2 117 1-117 1-117 (118)
3 2ghj_A 50S ribosomal protein L 100.0 0 0 324.8 11.9 118 2-120 1-118 (118)
4 3ofq_Q 50S ribosomal protein L 100.0 0 0 324.0 11.1 117 2-118 1-117 (117)
5 3bbo_S Ribosomal protein L20; 100.0 0 0 324.8 8.2 116 1-116 1-118 (119)
6 2ftc_L MRPL20 protein; mitocho 100.0 0 0 311.3 14.4 112 5-116 5-116 (118)
7 3e7l_A Transcriptional regulat 53.3 12 0.0005 17.3 3.7 27 64-90 34-60 (63)
8 3er7_A Uncharacterized NTF2-li 46.5 8.3 0.00035 18.3 2.0 23 90-112 8-31 (131)
9 3deu_A Transcriptional regulat 35.1 23 0.00098 15.6 7.5 60 56-115 33-94 (166)
10 2p9x_A Hypothetical protein PH 27.4 24 0.00099 15.6 1.8 46 60-113 7-56 (99)
No 1
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R 1voy_R 1vp0_R
Probab=100.00 E-value=0 Score=336.74 Aligned_cols=118 Identities=53% Similarity=0.837 Sum_probs=116.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189999999
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFI 80 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi 80 (123)
|||||+|+++++|||+||++|+||+|++++||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|++||+||
T Consensus 1 M~Rvkrg~~~~~rrkkilk~akGf~G~~~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~R~~g~~YS~fi 80 (118)
T 2zjr_N 1 MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFI 80 (118)
T ss_dssp -CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99877728989999999998063677765517999999999999999459999999999999999999999499899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99996298646899999974198999999999999855
Q gi|254780318|r 81 NGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 81 ~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
+||+++||.|||||||||||+||++|++||+++|++|+
T Consensus 81 ~~L~k~~i~LnRKiLs~LAi~dp~~F~~lv~~~k~a~~ 118 (118)
T 2zjr_N 81 NGLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ 118 (118)
T ss_dssp HHHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999388533999999996089999999999998629
No 2
>2j01_U 50S ribosomal protein L20; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: a.144.2.1 PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=100.00 E-value=0 Score=333.68 Aligned_cols=117 Identities=50% Similarity=0.806 Sum_probs=116.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189999999
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFI 80 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi 80 (123)
|||||+|+++++|||+||++|+||+|++++||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|++||+||
T Consensus 1 M~Rvkrg~~~~~rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYs~fi 80 (118)
T 2j01_U 1 MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFI 80 (118)
T ss_dssp -CCCCCCSHHHHHHHHHHHHTTTCSSGGGTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99876728899999999998352576652389999999999999999839999999999999999999984499889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9999629864689999997419899999999999985
Q gi|254780318|r 81 NGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 (123)
Q Consensus 81 ~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l 117 (123)
++|++++|+|||||||||||+||.+|++||+++|+++
T Consensus 81 ~~L~k~~i~LnRKvLs~lAi~dp~~F~~lv~~~k~~~ 117 (118)
T 2j01_U 81 HGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 117 (118)
T ss_dssp HHHHTTCCSCSCTTTTTTTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_conf 9999938977489999999608999999999998746
No 3
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=100.00 E-value=0 Score=324.82 Aligned_cols=118 Identities=55% Similarity=0.882 Sum_probs=115.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 87756655568998999974131564523699999999999999874699889999999998677999971899999999
Q gi|254780318|r 2 TRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFIN 81 (123)
Q Consensus 2 ~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~ 81 (123)
.||+ |+++++||++||++|+||+|++|+||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|+|||+||+
T Consensus 1 mRvk-G~~ar~rrkkilk~akGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~R~~g~sYs~fi~ 79 (118)
T 2ghj_A 1 MRVK-GPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFIN 79 (118)
T ss_dssp ------------------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9976-178899999999980625777655089999999999999995599999999999999999999990998999999
Q ss_pred HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999629864689999997419899999999999985565
Q gi|254780318|r 82 GLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLLVD 120 (123)
Q Consensus 82 ~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~~~ 120 (123)
||++++|.|||||||||||+||.+|++||+++|++|+++
T Consensus 80 ~L~~~~I~LnRKvLa~lAi~dp~sF~~lv~~~k~~l~~~ 118 (118)
T 2ghj_A 80 GLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQVQ 118 (118)
T ss_dssp HHTTTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 999918977499999999709999999999999975579
No 4
>3ofq_Q 50S ribosomal protein L20; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=100.00 E-value=0 Score=323.96 Aligned_cols=117 Identities=53% Similarity=0.873 Sum_probs=115.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 87756655568998999974131564523699999999999999874699889999999998677999971899999999
Q gi|254780318|r 2 TRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFIN 81 (123)
Q Consensus 2 ~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~ 81 (123)
.|||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|++||+||+
T Consensus 1 aRvkrg~~~~~rrkkilk~akGf~G~r~~~~r~A~~~v~kAl~yayr~Rk~kKr~fR~LWI~RINAa~r~~g~sYs~fi~ 80 (117)
T 3ofq_Q 1 ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFIN 80 (117)
T ss_dssp CCCCCSTTTHHHHHHHHHHHTTSCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97766368899999999982523667665069999999999999997599999999999999999999837998999999
Q ss_pred HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9996298646899999974198999999999999855
Q gi|254780318|r 82 GLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 82 ~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
||+++||.|||||||||||+||.+|++||+++|++|+
T Consensus 81 ~L~~~~I~LnRKvLs~lAi~dp~~F~~lv~~ak~~la 117 (117)
T 3ofq_Q 81 GLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 117 (117)
T ss_dssp HHHTTSSCCCTTTGGGGGTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9999089522999999996088999999999998639
No 5
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=324.83 Aligned_cols=116 Identities=40% Similarity=0.564 Sum_probs=113.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHH
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189--9999
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDL--NYSQ 78 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~--sYS~ 78 (123)
|||||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+ |||+
T Consensus 1 M~Rvkrg~~~~~rrkkilk~akGfrG~~~~~~r~A~~~v~kAl~yayr~Rk~kKr~fR~LWI~RINAA~r~~gl~~sYS~ 80 (119)
T 3bbo_S 1 MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSK 80 (119)
T ss_dssp CCCSCCTTHHHHHHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99866629999999999998451567741199999999999999988259899888999999999999998499576999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999962986468999999741989999999999998
Q gi|254780318|r 79 FINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSR 116 (123)
Q Consensus 79 fi~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~ 116 (123)
||+||+++||+|||||||||||+||++|++||+++...
T Consensus 81 fi~~L~~~~I~LnRKvLs~LAi~dp~~F~~lv~~v~kk 118 (119)
T 3bbo_S 81 FIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIKK 118 (119)
T ss_dssp HHHHHHHHTCCCSCSSGGGGTTSCTTTTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999991884738999999961989999999998716
No 6
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00 E-value=0 Score=311.33 Aligned_cols=112 Identities=37% Similarity=0.531 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 56655568998999974131564523699999999999999874699889999999998677999971899999999999
Q gi|254780318|r 5 KRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGLH 84 (123)
Q Consensus 5 k~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~L~ 84 (123)
.+|+++++|||+||++||||+|++|+||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|+|||+||++|+
T Consensus 5 ~Rg~~~~~Rrkkilk~AkGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYS~fi~~Lk 84 (118)
T 2ftc_L 5 NRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLV 84 (118)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 55723899999999982656677655089999999999999983589999999999999999999867998999999999
Q ss_pred HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 62986468999999741989999999999998
Q gi|254780318|r 85 KAGIVLDRKVLSDLAITQLDSFKKIVELSRSR 116 (123)
Q Consensus 85 ~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~ 116 (123)
++||.|||||||||||+||.+|++||+++|++
T Consensus 85 ~~~I~LnRKvLs~LAi~dp~sF~~lv~~ak~~ 116 (118)
T 2ftc_L 85 KCQVELNRKVLADLAIYEPKTFKSLAALASRR 116 (118)
T ss_pred HHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 91896649999999951999999999999871
No 7
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=53.26 E-value=12 Score=17.35 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 677999971899999999999629864
Q gi|254780318|r 64 RINAAVRVYDLNYSQFINGLHKAGIVL 90 (123)
Q Consensus 64 RINAa~r~~g~sYS~fi~~L~~~~i~L 90 (123)
.|..|++..|++.+.|..-|++-+|.+
T Consensus 34 n~s~aA~~Lgi~r~tL~~klkk~gI~~ 60 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 899999998979999999999928995
No 8
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=46.52 E-value=8.3 Score=18.26 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCHH-HHHHHHHCCHHHHHHHHHH
Q ss_conf 4689-9999974198999999999
Q gi|254780318|r 90 LDRK-VLSDLAITQLDSFKKIVEL 112 (123)
Q Consensus 90 LnRK-vLa~LAi~dp~~F~~lv~~ 112 (123)
|||= -|||+|..||+.|..|+.+
T Consensus 8 LdrYF~LsD~A~~d~~~l~eLi~L 31 (131)
T 3er7_A 8 LDRYFDLFDASRTDEKAFDDLISL 31 (131)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999998887615898999999985
No 9
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=35.09 E-value=23 Score=15.65 Aligned_cols=60 Identities=10% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 999999986779999718999999--999996298646899999974198999999999999
Q gi|254780318|r 56 DFRSLWIQRINAAVRVYDLNYSQF--INGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRS 115 (123)
Q Consensus 56 ~fR~LWI~RINAa~r~~g~sYS~f--i~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~ 115 (123)
...++|-..++...+++|+|++.| +..|...+=.+.-.-|++.-..+|.+...+|+...+
T Consensus 33 r~~r~~~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~ 94 (166)
T 3deu_A 33 RLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999876989999999999997698979999999979899899999999985
No 10
>2p9x_A Hypothetical protein PH0832; NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3}
Probab=27.43 E-value=24 Score=15.61 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHH----HHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 999867799997189999999999----962986468999999741989999999999
Q gi|254780318|r 60 LWIQRINAAVRVYDLNYSQFINGL----HKAGIVLDRKVLSDLAITQLDSFKKIVELS 113 (123)
Q Consensus 60 LWI~RINAa~r~~g~sYS~fi~~L----~~~~i~LnRKvLa~LAi~dp~~F~~lv~~a 113 (123)
+-+.-+--+.|+.|-..-..+..- ..++| +||..||.-|+..|+..
T Consensus 7 i~~~t~~~alr~~~p~le~~LeahL~~~~n~g~--------ElayeDP~kFkeaV~~L 56 (99)
T 2p9x_A 7 ILTKTIILALREVAPGLEAVLEAHLRATLNSGI--------ELAYDDPQKFKEAVSKL 56 (99)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHSCCT--------THHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE--------EHHHCCHHHHHHHHHHH
T ss_conf 999999999998480079999999998756660--------01414989999999999
Done!