RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780318|ref|YP_003064731.1| ribosomal protein L20 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (L:) Length = 118 Score = 127 bits (321), Expect = 5e-31 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 3 RVK-RGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLW 61 ++ R + ++VLK A+ F GR+ R A V R+ + R +KK++ R+LW Sbjct: 2 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 61 Query: 62 IQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 I RI AA + + L Y I L K + L+RKVL+DLAI + +FK + L+ R Sbjct: 62 INRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRR 117 >2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A (A:) Length = 118 Score = 127 bits (320), Expect = 7e-31 Identities = 62/115 (53%), Positives = 80/115 (69%) Query: 6 RGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRI 65 +G S K KK+LK AKG+ G+R + R AK AV R+ Y YRDR+++KR+FR LWI RI Sbjct: 4 KGPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVXRALYYQYRDRKLRKREFRRLWIARI 63 Query: 66 NAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLLVD 120 NAAVR Y LNYS FINGL KAGI LDRK+L+D A+ +F+++V + L V Sbjct: 64 NAAVRAYGLNYSTFINGLKKAGIELDRKILADXAVRDPQAFEQVVNKVKEALQVQ 118 >2j01_U 50S ribosomal protein L20; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (U:47-118) Length = 72 Score = 100 bits (251), Expect = 7e-23 Identities = 38/71 (53%), Positives = 51/71 (71%) Query: 47 YRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSF 106 Y R+ +KRDFR LWI RINAA R + LNYS FI+GL KAGI +DRK L+DLA+ + F Sbjct: 1 YAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVF 60 Query: 107 KKIVELSRSRL 117 ++VE +++ Sbjct: 61 AELVERAKAAQ 71 >3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (S:1-74) Length = 74 Score = 99.6 bits (249), Expect = 1e-22 Identities = 32/74 (43%), Positives = 41/74 (55%) Query: 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSL 60 MTRVKRG ++ + KK+ A F G R R+ A+RDR +KRDFR L Sbjct: 1 MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRL 60 Query: 61 WIQRINAAVRVYDL 74 WI RINAA+R + Sbjct: 61 WITRINAAIRERGV 74 >3i1n_Q 50S ribosomal protein L20; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Q 3e1b_J 3e1d_J 1vs6_Q 3i1p_Q 3i1r_Q 3i1t_Q 3i20_Q 3i22_Q 2qam_Q* 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* ... (Q:50-118) Length = 69 Score = 98.5 bits (246), Expect = 3e-22 Identities = 34/68 (50%), Positives = 49/68 (72%) Query: 50 RRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKI 109 RR +KR FR LWI RINAA R ++YS+FINGL KA + +DRK+L+D+A+ +F + Sbjct: 1 RRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTAL 60 Query: 110 VELSRSRL 117 VE +++ L Sbjct: 61 VEKAKAAL 68 >2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (N:52-118) Length = 67 Score = 97.0 bits (242), Expect = 8e-22 Identities = 37/65 (56%), Positives = 50/65 (76%) Query: 53 KKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVEL 112 KKRDFR LWIQRINA R++ +NYS FINGL +A I L+RKVL+D+A + ++FK +V+ Sbjct: 2 KKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDA 61 Query: 113 SRSRL 117 SR+ Sbjct: 62 SRNAR 66 >2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (N:1-51) Length = 51 Score = 66.5 bits (163), Expect = 1e-12 Identities = 25/51 (49%), Positives = 30/51 (58%) Query: 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRR 51 M R K G+V +HKKVLK AKGF+G R R A + + Y YRDRR Sbjct: 1 MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRR 51 >1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} (A:) Length = 481 Score = 27.7 bits (61), Expect = 0.62 Identities = 5/55 (9%), Positives = 13/55 (23%) Query: 14 HKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAA 68 V +S + + + D + + + + R A Sbjct: 300 THWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGAT 354 >1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} (A:1-83,A:235-524) Length = 373 Score = 25.2 bits (55), Expect = 3.1 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 46 AYRDRRVKKRDFRSLWIQRINAAVRVYDL 74 Y + ++K F W++RI A ++D Sbjct: 139 LYDWKAMEKDGFSW-WVRRIQRATDLFDE 166 >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} (A:1-78,A:221-505) Length = 363 Score = 25.2 bits (55), Expect = 3.4 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 46 AYRDRRVKKRDFRSLWIQRINAAVRVYDL 74 Y +K FR WI+R+ ++++D Sbjct: 133 VYNWEEHEKEGFRW-WIRRVLHNLKLFDF 160 >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus aquaticus} (A:1-61,A:208-500) Length = 354 Score = 24.8 bits (54), Expect = 4.2 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 46 AYRDRRVKKRDFRSLWIQRINAAVRVYDL 74 YR +++ F WI+R+ A+ ++ L Sbjct: 116 LYRWDVLEREGFSF-WIRRLEKALELFHL 143 >1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} (A:) Length = 129 Score = 24.5 bits (53), Expect = 5.6 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 70 RVYDLNYSQFINGLHKAG 87 R Y+ NY QF +G+H G Sbjct: 53 RYYEANYWQFPDGIHYNG 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.134 0.366 Gapped Lambda K H 0.267 0.0745 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 841,837 Number of extensions: 33516 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 23 Length of query: 123 Length of database: 4,956,049 Length adjustment: 73 Effective length of query: 50 Effective length of database: 2,488,284 Effective search space: 124414200 Effective search space used: 124414200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.0 bits)