RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780318|ref|YP_003064731.1| ribosomal protein L20
[Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)



>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus
           thermophilus [TaxId: 274]}
          Length = 117

 Score =  142 bits (361), Expect = 6e-36
 Identities = 58/115 (50%), Positives = 78/115 (67%)

Query: 3   RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62
           R K GVV   KHKK+LK AKG++G R  + R A+  +  +  YAY  R+ +KRDFR LWI
Sbjct: 2   RAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWI 61

Query: 63  QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117
            RINAA R + LNYS FI+GL KAGI +DRK L+DLA+ +   F ++VE +++  
Sbjct: 62  VRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 116


>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 117

 Score =  140 bits (354), Expect = 4e-35
 Identities = 61/115 (53%), Positives = 79/115 (68%)

Query: 3   RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62
           R K G+V   +HKKVLK AKGF+G R    R A   +  +  Y YRDRR KKRDFR LWI
Sbjct: 2   RAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWI 61

Query: 63  QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117
           QRINA  R++ +NYS FINGL +A I L+RKVL+D+A  + ++FK +V+ SR+  
Sbjct: 62  QRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR 116


>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score =  139 bits (351), Expect = 9e-35
 Identities = 62/115 (53%), Positives = 84/115 (73%)

Query: 3   RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62
           RVKRGV++ A+HKK+LK AKG+YG R    R A  AV ++ QYAYRDRR +KR FR LWI
Sbjct: 1   RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 60

Query: 63  QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117
            RINAA R   ++YS+FINGL KA + +DRK+L+D+A+    +F  +VE +++ L
Sbjct: 61  ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115


>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 60

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 61  WIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117
           WI RINAAVR Y LNYS FINGL KAGI LDRK+L+D+A+    +F+++V   +  L
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57


>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
           subunit {Thale cress (Arabidopsis thaliana), chloroplast
           [TaxId: 3702]}
          Length = 179

 Score = 23.8 bits (50), Expect = 4.9
 Identities = 5/48 (10%), Positives = 16/48 (33%)

Query: 32  IRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQF 79
           +        +       +R  + +    +W   +N   + + L++  F
Sbjct: 131 VCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTF 178


>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 107

 Score = 22.8 bits (49), Expect = 9.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 55 RDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGI 88
          +  R L I       R Y  NY QF +G++  G 
Sbjct: 12 KQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGC 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,921
Number of extensions: 17463
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 8
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)