RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780318|ref|YP_003064731.1| ribosomal protein L20 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]} Length = 117 Score = 142 bits (361), Expect = 6e-36 Identities = 58/115 (50%), Positives = 78/115 (67%) Query: 3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62 R K GVV KHKK+LK AKG++G R + R A+ + + YAY R+ +KRDFR LWI Sbjct: 2 RAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWI 61 Query: 63 QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 RINAA R + LNYS FI+GL KAGI +DRK L+DLA+ + F ++VE +++ Sbjct: 62 VRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 116 >d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]} Length = 117 Score = 140 bits (354), Expect = 4e-35 Identities = 61/115 (53%), Positives = 79/115 (68%) Query: 3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62 R K G+V +HKKVLK AKGF+G R R A + + Y YRDRR KKRDFR LWI Sbjct: 2 RAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWI 61 Query: 63 QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 QRINA R++ +NYS FINGL +A I L+RKVL+D+A + ++FK +V+ SR+ Sbjct: 62 QRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR 116 >d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]} Length = 115 Score = 139 bits (351), Expect = 9e-35 Identities = 62/115 (53%), Positives = 84/115 (73%) Query: 3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62 RVKRGV++ A+HKK+LK AKG+YG R R A AV ++ QYAYRDRR +KR FR LWI Sbjct: 1 RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 60 Query: 63 QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 RINAA R ++YS+FINGL KA + +DRK+L+D+A+ +F +VE +++ L Sbjct: 61 ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115 >d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]} Length = 60 Score = 86.9 bits (216), Expect = 4e-19 Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 61 WIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 WI RINAAVR Y LNYS FINGL KAGI LDRK+L+D+A+ +F+++V + L Sbjct: 1 WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57 >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 179 Score = 23.8 bits (50), Expect = 4.9 Identities = 5/48 (10%), Positives = 16/48 (33%) Query: 32 IRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQF 79 + + +R + + +W +N + + L++ F Sbjct: 131 VCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTF 178 >d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Score = 22.8 bits (49), Expect = 9.8 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 55 RDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGI 88 + R L I R Y NY QF +G++ G Sbjct: 12 KQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGC 45 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.134 0.366 Gapped Lambda K H 0.267 0.0713 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 416,921 Number of extensions: 17463 Number of successful extensions: 54 Number of sequences better than 10.0: 1 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 8 Length of query: 123 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 48 Effective length of database: 1,377,846 Effective search space: 66136608 Effective search space used: 66136608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 47 (21.9 bits)