254780319

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 65/67 (97%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKTNSSSKKRFSITA+GKV+AQAAGKRHGMIKRSNKFIRNARG MVL +ADAKK+IR
Sbjct: 1  MPKMKTNSSSKKRFSITASGKVKAQAAGKRHGMIKRSNKFIRNARGAMVLGAADAKKIIR 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  117 bits (292), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF ITATGKVRA AAGKRHGMIKRSNKFIR+ARGTMVLA  D KKV++
Sbjct: 1  MPKMKTKSSAKKRFKITATGKVRAAAAGKRHGMIKRSNKFIRDARGTMVLAEPDGKKVVK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF ITA+GKV A AAGKRHGMIKRSNKFIRNARGTMVLA AD KKVI+
Sbjct: 1  MPKMKTKSSAKKRFKITASGKVLAAAAGKRHGMIKRSNKFIRNARGTMVLAEADGKKVIK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF +TATGKVRA AAGKRHGMIKR+NKFIR+ARGTMVLA  D KKV++
Sbjct: 1  MPKMKTKSSAKKRFKVTATGKVRAAAAGKRHGMIKRTNKFIRDARGTMVLAEPDGKKVVK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF ITATGKV+A AAGKRHGMIKRSNKFIR+ARGTMVLA  D +KVI+
Sbjct: 1  MPKMKTKSSAKKRFKITATGKVKAAAAGKRHGMIKRSNKFIRDARGTMVLAEPDGRKVIK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT S++KKRF ITATGKV A AAGKRHGMIKR+NKFIR+ARGTMVLA AD KKV++
Sbjct: 1  MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF ITATGKV+A AAGKRHGMIKR+NKFIR+ARGTMVLA  D +KVI+
Sbjct: 1  MPKMKTKSSAKKRFKITATGKVKAAAAGKRHGMIKRTNKFIRDARGTMVLAEPDGRKVIK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF ITA+GKV+A AAGKRHGMIKRSNKFIR+ARGTMVLA  D +KVI+
Sbjct: 1  MPKMKTKSSAKKRFKITASGKVKAAAAGKRHGMIKRSNKFIRDARGTMVLAEPDGRKVIK 60

Query: 61 NYLPNGI 67
          NYLPNG+
Sbjct: 61 NYLPNGL 67

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF +TATGKV+A AAGKRHGMIKRSNKFIR+ARG MVLA  DAKKVI+
Sbjct: 1  MPKMKTKSSAKKRFKVTATGKVKAAAAGKRHGMIKRSNKFIRDARGMMVLAEQDAKKVIQ 60

Query: 61 NYLPNGI 67
           YLPNG+
Sbjct: 61 CYLPNGL 67

Species: Bartonella clarridgeiae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT SS+KKRF +TATGK++A AAGKRHGMIKRSNKFIR+ARG MVLA +DAKKVI+
Sbjct: 1  MPKMKTKSSAKKRFKVTATGKIKAAAAGKRHGMIKRSNKFIRDARGMMVLAESDAKKVIQ 60

Query: 61 NYLPNGI 67
           YLPNG+
Sbjct: 61 CYLPNGL 67

Species: Bartonella sp. AR 15-3
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT S + KRF +T +GKV+ + AGKRH + K+S K  R  RGT V++ ADAK+V R
Sbjct: 1  MPKMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKKSTKRKRQLRGTTVVSKADAKRVKR 60

Query: 61 NYLPNG 66
            LP  
Sbjct: 61 -MLPYA 65

Length = 65

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT+ ++ KRF IT +GK++ + AGKRH + K+S+K  RN R   ++++ D K+V  
Sbjct: 1  PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKAIVSAGDLKRVKL 59

This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. Length = 63

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/59 (42%), Positives = 40/59 (67%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT  ++ KRF  TA+GK++ + AGKRH + K+S K  R  R  ++++  D+K+V +
Sbjct: 1  PKMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKHVLVSKTDSKRVDK 59

Length = 61

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKV 58
          MPK+KT  ++ KR+  T  GK   + A K H + K+S+K  R    T+ ++  D+K +
Sbjct: 1  MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSI 58

Length = 65

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT   + KRF IT TGK++ + AGKRH + K+S K  R+ R T V++ AD K+V R
Sbjct: 1  MPKMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAVVSKADLKRVKR 60

Query: 61 NYLPN 65
            L  
Sbjct: 61 LLLYA 65

Length = 65

Probab=99.96  E-value=8.2e-31  Score=170.83  Aligned_cols=64  Identities=42%  Similarity=0.652  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             8732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
T Consensus         1 PKmKT~k~AaKRFK~Tg~GKi~R~~A~k~Hll~kKs~k~KR~Lr~~~~V~~~d~~~v~k~~Lpy   64 (64)
T TIGR00001         1 PKMKTKKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAIVSKGDLKRVKKLLLPY   64 (64)
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             9864342100002331368077601684000048884464224887311602368898863379

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . L35 is a basic protein of 60 to 70 amino-acid residues from the large (50S) subunit . Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes . It belongs to a family of ribosomal proteins, including L35 from bacteria, plant chloroplast, red algae chloroplasts and cyanelles. In plants it is a nuclear encoded gene product, which suggests a chloroplast-to-nucleus relocation during the evolution of higher plants .; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.

Probab=99.95  E-value=4.4e-29  Score=162.38  Aligned_cols=65  Identities=48%  Similarity=0.685  Sum_probs=63.6

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
T Consensus         1 MPKmKT~~~akKRFk~T~sGKvkr~~a~k~H~l~~Ks~k~kR~lr~~~~v~~~d~k~ik~-lLPy~   65 (65)
T PRK00172          1 MPKMKTKSGAAKRFKVTGSGKVKRKHAFKRHILTKKSTKRKRQLRGTALVSKSDVKRVKR-MLPYA   65 (65)
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCEECHHHHHHHHH-HCCCC
T ss_conf             997654212353146768987862537655034137888998667982268999999998-68899

Probab=99.95  E-value=3.9e-29  Score=162.65  Aligned_cols=64  Identities=36%  Similarity=0.449  Sum_probs=62.6

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             98732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
T Consensus         1 MPKmKT~k~AaKRFk~TgsGK~~r~~A~k~HiL~kKs~KrKR~Lr~~~~v~~~D~~~v~-~mLPY   64 (65)
T CHL00103          1 MPKLKTRKAAAKRFKKTSKGKFLRRKAFKSHLLQKKSSKRKRKLSQTVCVSKGDIKSIK-LMLPY   64 (65)
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEEEECCHHHHCCCCCHHHHHHCCCCEEECHHHHHHHH-HHCCC
T ss_conf             99652236567531246788575310265440236778888724776205675799999-87778

Probab=99.93  E-value=6.5e-27  Score=151.76  Aligned_cols=64  Identities=50%  Similarity=0.672  Sum_probs=61.6

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             98732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
T Consensus         1 MPKmKT~k~aaKRFK~T~~Gkikr~~A~k~H~l~kKs~k~kR~Lr~~~~v~~~d~k~v~~-~l~~   64 (65)
T COG0291           1 MPKMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAVVSKADLKRVKR-LLLY   64 (65)
T ss_pred             CCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCEECHHHHHHHHH-HCCC
T ss_conf             985201165575246657886873325520004467778898446886056889999998-6368

Probab=99.89  E-value=1.1e-23  Score=135.91  Aligned_cols=61  Identities=43%  Similarity=0.628  Sum_probs=58.8

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHC
Q ss_conf             87323301212257759980970324885254158804654146986837778999999858
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYL   63 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~ll   63 (67)
T Consensus         1 pKmKT~k~aaKRFk~t~sGk~~r~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~v~~-mL   61 (61)
T pfam01632         1 PKMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKHVLVSKTDSKRVDK-LL   61 (61)
T ss_pred             CCCCHHHHHHHHEEECCCCEEEEHHCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HC
T ss_conf             98530266776623668840750115610134357888998547885466878999998-49

Probab=96.98  E-value=0.00021  Score=41.60  Aligned_cols=63  Identities=19%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             CCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    3 KMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         3 KmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
T Consensus        16 krKtvk~V~~RF~RL~~G~WIr~~~Gr~KklwKK~~a~~krlr~hv~cnk~qs~LLDkm~t~f   78 (101)
T pfam10196        16 KRKTVKAVLDRFKRLHWGLWIRRHAGRHKKLWKKKAARRKRLREHVFCNKTQSKLLDKMTTPY   78 (101)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHEECHHHHHHHHHHHHHH
T ss_conf             625289999999860467454401451367662378999888887111089999999872376

Probab=95.12  E-value=0.0069  Score=34.20  Aligned_cols=63  Identities=13%  Similarity=0.109  Sum_probs=57.3

Q ss_pred             CCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    3 KMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         3 KmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
T Consensus        79 krktvkaVldRFkRL~~G~WIr~h~Gr~Kkl~kK~~a~~krl~~~vfcnktQs~lLDKm~Tsy  141 (172)
T KOG4316          79 KRKTVKAVLDRFKRLHCGLWIRAHPGRHKKLYKKDEAWQKRLLYYVFCNKTQSELLDKMMTSY  141 (172)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHEECHHHHHHHHHHHHHH
T ss_conf             624099999999842467456516752466651489999887886120238999999975687

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT+  +K+R  IT TGKV A  +GKRH    +S   IR      VLA A+  ++  
Sbjct: 1  MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKL 60

Query: 61 NYLPNG 66
            LP G
Sbjct: 61 -MLPRG 65

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT+  +KKR  ITA+GKV A   GKRH   ++S K IR      VLA  +A+++  
Sbjct: 1  MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 60

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPK+KT   + KRF  T  G  + + A  RH + K++ K  R+ R   +++  D   VI 
Sbjct: 1  MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 60

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PK+KT   + KRF  T  G  + + A  RH + K++ K  R+ R   +++  D   VI 
Sbjct: 1  PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 59

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 3   KMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
           KMKT+ +S KRF +T  GK+  + AGK+H + K++ K        + +  +D   VI 
Sbjct: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIG 148

Probab=99.95  E-value=3.1e-29  Score=162.02  Aligned_cols=65  Identities=45%  Similarity=0.581  Sum_probs=63.6

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++||||+|++++||++|+++++|++++|+|+++.+|+++|.++|.+ |||||
T Consensus         1 MPKmKT~k~akKRfkvT~sGKv~r~~a~k~H~l~~Ks~k~kR~lr~~~~v~~~~~k~ik~-lLPyg   65 (66)
T 2zjr_3            1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKL-MLPRG   65 (66)
T ss_pred             CCCCCCCHHHHHEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             997543122352057768987865537776665558888998657985478999999999-67899

Probab=99.94  E-value=1.2e-28  Score=159.23  Aligned_cols=64  Identities=47%  Similarity=0.612  Sum_probs=62.6

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf             98732330121225775998097032488525415880465414698683777899999985868
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN   65 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY   65 (67)
                      |||||||+||+|||++||||||++++||++|+++++|.+++|+|+++.+|+++|.++|.+ ||||
T Consensus         1 MPKmKT~k~a~KRfkvT~sGKi~r~~ag~~H~l~~Ks~k~kR~lr~~~~v~~~~~k~ik~-lLPY   64 (65)
T 2j01_8            1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL-LLPY   64 (65)
T ss_dssp             -CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCSSHHHHHHTT-TTTC
T ss_pred             CCCCCCCHHHHHEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCC
T ss_conf             997643211351157768987874416777765448888898657985587999999998-3899

Probab=99.93  E-value=9.8e-27  Score=149.82  Aligned_cols=64  Identities=33%  Similarity=0.449  Sum_probs=62.3

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             87323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      ||||||+||+|||++||||+|++++||++|++++||.+++|+|+++++|+++|.++|.+ ||||.
T Consensus         1 PKmKT~k~akKRfk~T~sGKikr~~a~~~H~l~~Ks~k~kR~lr~~~~v~~~~~k~vkk-lLPYa   64 (64)
T 3ofq_3            1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA-CLPYA   64 (64)
T ss_dssp             CCCCCCTTGGGSCCCCSSSCCCCCCSSCSSCCSSSCHHHHHHHSSCCCCCHHHHHHHHH-HCSCC
T ss_pred             CCCCCCHHHHHCEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             98764123463046778997864417777665458988998767982478999999998-68899

Probab=99.89  E-value=8.9e-25  Score=140.24  Aligned_cols=63  Identities=35%  Similarity=0.456  Sum_probs=60.9

Q ss_pred             CCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             7323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    3 KMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         3 KmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||+||+|||++||+|||+|++||++|++++||.+++|+|+++.+|+++|.++|.+ ||||-
T Consensus        91 KMKThKgAkKRFKvTgsGKvkR~rAgkrHll~kKS~krKRrLRk~~~Vs~sd~K~Ikk-lLPY~  153 (159)
T 3bbo_5           91 KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIG-ALPYL  153 (159)
T ss_dssp             CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSCCSSCTTSCSEEECCSTHHHHTTTT-TTTC-
T ss_pred             CCCCCHHHHCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             6455331241158757975866527777665458998998657985477999999998-57983

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT+  +KKR  ITA+GKV A   GKRH   ++S K IR      VLA  +A+++  
Sbjct: 1  PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 59

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PK+KT   + KRF  T  G  + + A  RH + K++ K  R+ R   +++  D   VI 
Sbjct: 1  PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 59

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.1e-27  Score=151.89  Aligned_cols=64  Identities=33%  Similarity=0.449  Sum_probs=62.2

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             87323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      ||||||+||+|||++||||||++++||++|+|++||++++|+|+++.+|+++|.+.|.+ ||||.
T Consensus         1 PKmKT~k~akKRfkvT~sGKi~r~~agk~H~l~~Ks~krkR~lr~~~~v~~~d~k~ik~-lLPYa   64 (64)
T d2qam31           1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA-CLPYA   64 (64)
T ss_dssp             CCCCCCTTTTTTCCCCSSSCCCBCCSSSSSCCTTSCHHHHHTTSSCBCCCSSSHHHHHH-HCTTC
T ss_pred             CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             98765223464135778997863417777565458998998657981278999999998-68899

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.9e-27  Score=151.21  Aligned_cols=64  Identities=45%  Similarity=0.582  Sum_probs=61.9

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             87323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      ||||||+||+|||++||||||++++||++|+|+++|++++|+|+++.+|+++|.+.|. .||||-
T Consensus         1 PKmKT~k~a~KRFk~T~sGKikr~~ag~~H~l~~Ks~k~kR~lr~~~~v~~~~~k~ik-~lLPY~   64 (64)
T d2j0181           1 PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIK-LLLPYE   64 (64)
T ss_dssp             CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCSSHHHHHHT-TTTTC-
T ss_pred             CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHH-HHCCCC
T ss_conf             9876511235314676898787330677655434898899865798337799999999-848999

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.92  E-value=5.9e-26  Score=144.84  Aligned_cols=62  Identities=44%  Similarity=0.549  Sum_probs=60.5

Q ss_pred             CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCC
Q ss_conf             873233012122577599809703248852541588046541469868377789999998586
Q gi|254780319|r    2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLP   64 (67)
Q Consensus         2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llP   64 (67)
                      ||||||+||+|||++||||||++.+||++|+|+++|.+++|+|+++.+|+++|++.|.+ |||
T Consensus         1 PKmKT~k~a~KRFk~T~sGKv~r~~agk~H~l~kKs~krkR~lr~~~~v~~~~~k~ik~-~LP   62 (63)
T d2zjr31           1 PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKL-MLP   62 (63)
T ss_pred             CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCEECHHHHHHHHH-HCC
T ss_conf             98654212464135778987851537765155447878898657980248999999999-777

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPK+KT   + KRF  T  G  + + A  RH + K++ K  R+ R   +++  D   VI 
Sbjct: 1  MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 60

Query: 61 NYLPNG 66
            LP  
Sbjct: 61 -CLPYA 65

 Score = 64.3 bits (157), Expect = 6e-12
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT+  +KKR  ITA+GKV A   GKRH   ++S K IR      VLA  +A+++  
Sbjct: 1  MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 60

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT+  +K+R  IT TGKV A  +GKRH    +S   IR      VLA A+  + ++
Sbjct: 1  MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWAR-MK 59

Query: 61 NYLPNG 66
            LP G
Sbjct: 60 LMLPRG 65

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 1   MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
             KMKT+ +S KRF +T  GK+  + AGK+H + K++ K        + +  +D   VI 
Sbjct: 89  GYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIG 148

Probab=99.95  E-value=1e-28  Score=160.28  Aligned_cols=65  Identities=45%  Similarity=0.581  Sum_probs=63.4

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++||+|+|++++||++|+++++|++++|+|+++.+|+++|.++|.+ |||||
T Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~k~kR~Lr~~~~v~~~~~k~ik~-~Lpy~   65 (66)
T 2zjr_3            1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKL-MLPRG   65 (66)
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             997643221353136778987860627776455337988998667985577999999999-67899

Probab=99.95  E-value=5.5e-29  Score=161.57  Aligned_cols=65  Identities=34%  Similarity=0.464  Sum_probs=63.5

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++||||+|++++||++|+++++|++++|+|+++.+|+++|.++|.+ |||||
T Consensus         1 MPKmKT~k~akKRFkvT~sGKi~r~~agk~H~~~~Ks~k~kR~L~~~~~v~~~~~k~ik~-~LPy~   65 (65)
T 3i1n_3            1 MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA-CLPYA   65 (65)
T ss_dssp             -CCCCCCTTGGGTCCCCTTSCCCEECSSCSSCCTTSCHHHHHHHSSEECCCHHHHHHHHH-TCTTC
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             997642043564125778998862538876144247988898578984468999999998-68899

Probab=99.94  E-value=2.1e-28  Score=158.71  Aligned_cols=65  Identities=46%  Similarity=0.599  Sum_probs=63.2

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++|++|+|++++||++|+++++|++++|+|+++.+|+++|.++|.+ ||||.
T Consensus         1 MPKmKT~k~a~KRFk~T~sGKikr~~a~k~H~l~~Ks~krkR~Lr~~~~v~~~~~k~ikk-~LPy~   65 (65)
T 2j01_8            1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL-LLPYE   65 (65)
T ss_dssp             -CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCSSHHHHHHTT-TTTC-
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             997643212353046778987864306787765548888898647983367999999998-28999

Probab=99.90  E-value=2.8e-25  Score=143.41  Aligned_cols=65  Identities=34%  Similarity=0.408  Sum_probs=62.8

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++|++|+|+|++||++|++++||.+++|+|+++.+|+++|.+.|.+ ||||.
T Consensus        89 ~~KmKT~k~a~KRFk~t~~Gk~~r~~agk~H~~~kKs~~~krrLr~~~~v~~~~~~~i~k-~lpy~  153 (159)
T 3bbo_5           89 GYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIG-ALPYL  153 (159)
T ss_dssp             --CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSCCSSCTTSCSEEECCSTHHHHTTTT-TTTC-
T ss_pred             CCCCCCCHHHHHEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCH
T ss_conf             766564341240047767975855417776564448998998657985467989999999-57971