Query gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 108 out of 707
Neff 5.0
Searched_HMMs 13730
Date Wed Jun 1 02:22:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780319.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qam31 d.301.1.1 (3:1-64) Rib 99.9 2.1E-27 1.5E-31 151.9 2.8 64 2-66 1-64 (64)
2 d2j0181 d.301.1.1 (8:2-65) Rib 99.9 2.9E-27 2.1E-31 151.2 3.0 64 2-66 1-64 (64)
3 d2zjr31 d.301.1.1 (3:2-64) Rib 99.9 5.9E-26 4.3E-30 144.8 5.5 62 2-64 1-62 (63)
4 d1iq8a4 d.17.6.1 (A:361-505) A 4.1 1.2E+02 0.0086 11.2 4.7 46 13-65 100-145 (145)
5 d1vpxa_ c.1.10.1 (A:) Decameri 3.4 1.2E+02 0.0086 11.2 0.1 18 49-67 6-23 (218)
6 d1k78a1 a.4.1.5 (A:19-81) Pax- 3.3 64 0.0046 12.6 -1.4 11 7-17 33-43 (63)
7 d1vqoj1 c.21.1.1 (J:4-145) Rib 2.8 1.6E+02 0.012 10.6 1.2 11 55-65 76-86 (142)
8 d2qam41 g.42.1.1 (4:1-38) Ribo 2.3 1.9E+02 0.014 10.2 0.1 11 4-14 1-11 (38)
9 d2zjr41 g.42.1.1 (4:1-37) Ribo 2.1 2E+02 0.014 10.1 -0.0 10 4-13 1-10 (37)
10 d1qf8a_ g.41.4.1 (A:) Casein k 1.9 1.7E+02 0.013 10.4 -0.6 6 62-67 113-118 (173)
No 1
>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=2.1e-27 Score=151.89 Aligned_cols=64 Identities=33% Similarity=0.449 Sum_probs=62.2
Q ss_pred CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 87323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG 66 (67)
Q Consensus 2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg 66 (67)
||||||+||+|||++||||||++++||++|+|++||++++|+|+++.+|+++|.+.|.+ ||||.
T Consensus 1 PKmKT~k~akKRfkvT~sGKi~r~~agk~H~l~~Ks~krkR~lr~~~~v~~~d~k~ik~-lLPYa 64 (64)
T d2qam31 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA-CLPYA 64 (64)
T ss_dssp CCCCCCTTTTTTCCCCSSSCCCBCCSSSSSCCTTSCHHHHHTTSSCBCCCSSSHHHHHH-HCTTC
T ss_pred CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf 98765223464135778997863417777565458998998657981278999999998-68899
No 2
>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]}
Probab=99.93 E-value=2.9e-27 Score=151.21 Aligned_cols=64 Identities=45% Similarity=0.582 Sum_probs=61.9
Q ss_pred CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 87323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG 66 (67)
Q Consensus 2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg 66 (67)
||||||+||+|||++||||||++++||++|+|+++|++++|+|+++.+|+++|.+.|. .||||-
T Consensus 1 PKmKT~k~a~KRFk~T~sGKikr~~ag~~H~l~~Ks~k~kR~lr~~~~v~~~~~k~ik-~lLPY~ 64 (64)
T d2j0181 1 PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIK-LLLPYE 64 (64)
T ss_dssp CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCSSHHHHHHT-TTTTC-
T ss_pred CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHH-HHCCCC
T ss_conf 9876511235314676898787330677655434898899865798337799999999-848999
No 3
>d2zjr31 d.301.1.1 (3:2-64) Ribosomal protein L35p {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.92 E-value=5.9e-26 Score=144.84 Aligned_cols=62 Identities=44% Similarity=0.549 Sum_probs=60.5
Q ss_pred CCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCC
Q ss_conf 873233012122577599809703248852541588046541469868377789999998586
Q gi|254780319|r 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLP 64 (67)
Q Consensus 2 PKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llP 64 (67)
||||||+||+|||++||||||++.+||++|+|+++|.+++|+|+++.+|+++|++.|.+ |||
T Consensus 1 PKmKT~k~a~KRFk~T~sGKv~r~~agk~H~l~kKs~krkR~lr~~~~v~~~~~k~ik~-~LP 62 (63)
T d2zjr31 1 PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKL-MLP 62 (63)
T ss_pred CCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCEECHHHHHHHHH-HCC
T ss_conf 98654212464135778987851537765155447878898657980248999999999-777
No 4
>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine transglycosylase, C2 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.13 E-value=1.2e+02 Score=11.25 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=34.6
Q ss_pred EEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCC
Q ss_conf 25775998097032488525415880465414698683777899999985868
Q gi|254780319|r 13 RFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPN 65 (67)
Q Consensus 13 RFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPY 65 (67)
.|.+..+|++..--++..|+++- |.-.+...++..-++.+. .+|||
T Consensus 100 ~~~~srtgRiR~V~~~g~~l~t~------R~~DG~lsLt~~GA~~L~-~~lp~ 145 (145)
T d1iq8a4 100 KVELSKTGMPRQVKVNGKRLATV------RADDGLLTLGIEGAKRLH-RVLPY 145 (145)
T ss_dssp EEEECSSSCEEEEECSSSEEEEE------CTTTSCEEECHHHHHHHH-HHSCT
T ss_pred EEEECCCCCEEEEEECCEEEEEE------ECCCCEEEECHHHHHHHH-HHCCC
T ss_conf 49973589538995099189999------668983876689999999-76779
No 5
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}
Probab=3.44 E-value=1.2e+02 Score=11.24 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=8.8
Q ss_pred EECHHHHHHHHHHHCCCCC
Q ss_conf 8377789999998586889
Q gi|254780319|r 49 VLASADAKKVIRNYLPNGI 67 (67)
Q Consensus 49 ~v~~~~~~~i~r~llPYg~ 67 (67)
+++.+|...+.+ ++|||+
T Consensus 6 ~lDtad~~~i~~-~~~~g~ 23 (218)
T d1vpxa_ 6 FLDTANLEEIKK-GVEWGI 23 (218)
T ss_dssp EEECCCHHHHHH-HHHTTC
T ss_pred EEECCCHHHHHH-HHHCCC
T ss_conf 996799999999-974699
No 6
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.29 E-value=64 Score=12.56 Aligned_cols=11 Identities=0% Similarity=0.262 Sum_probs=4.9
Q ss_pred CCHHHEEEEEC
Q ss_conf 30121225775
Q gi|254780319|r 7 NSSSKKRFSIT 17 (67)
Q Consensus 7 ~k~akKRFk~T 17 (67)
...|++||.|+
T Consensus 33 ~r~aA~rf~VS 43 (63)
T d1k78a1 33 PCDISRQLRVS 43 (63)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999995977
No 7
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=2.83 E-value=1.6e+02 Score=10.58 Aligned_cols=11 Identities=45% Similarity=0.766 Sum_probs=7.8
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999985868
Q gi|254780319|r 55 AKKVIRNYLPN 65 (67)
Q Consensus 55 ~~~i~r~llPY 65 (67)
..+.++.||||
T Consensus 76 l~raVrGMLP~ 86 (142)
T d1vqoj1 76 FKRTIRGMLPH 86 (142)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHCCCCC
T ss_conf 99998174788
No 8
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=2.31 E-value=1.9e+02 Score=10.23 Aligned_cols=11 Identities=45% Similarity=0.410 Sum_probs=6.4
Q ss_pred CCCCCHHHEEE
Q ss_conf 32330121225
Q gi|254780319|r 4 MKTNSSSKKRF 14 (67)
Q Consensus 4 mKT~k~akKRF 14 (67)
||..+|.++|-
T Consensus 1 MKVr~svKk~C 11 (38)
T d2qam41 1 MKVRASVKKLC 11 (38)
T ss_dssp CCCCSCCCCCS
T ss_pred CCCCHHHHHHC
T ss_conf 95021223007
No 9
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.11 E-value=2e+02 Score=10.13 Aligned_cols=10 Identities=60% Similarity=0.531 Sum_probs=0.0
Q ss_pred CCCCCHHHEE
Q ss_conf 3233012122
Q gi|254780319|r 4 MKTNSSSKKR 13 (67)
Q Consensus 4 mKT~k~akKR 13 (67)
||..+|.+++
T Consensus 1 MKVr~SvKk~ 10 (37)
T d2zjr41 1 MKVRSSVKKM 10 (37)
T ss_dssp CEECSSCCCC
T ss_pred CCCCHHHHHH
T ss_conf 9612343532
No 10
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.90 E-value=1.7e+02 Score=10.40 Aligned_cols=6 Identities=50% Similarity=0.999 Sum_probs=0.0
Q ss_pred HCCCCC
Q ss_conf 586889
Q gi|254780319|r 62 YLPNGI 67 (67)
Q Consensus 62 llPYg~ 67 (67)
+||||+
T Consensus 113 ~LPiGl 118 (173)
T d1qf8a_ 113 MLPIGL 118 (173)
T ss_dssp CEEECS
T ss_pred CCCCCC
T ss_conf 306545
Done!