RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35
[Candidatus Liberibacter asiaticus str. psy62]
(67 letters)
>gnl|CDD|30639 COG0291, RpmI, Ribosomal protein L35 [Translation, ribosomal
structure and biogenesis].
Length = 65
Score = 58.7 bits (142), Expect = 3e-10
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
MPKMKT + KRF IT TGK++ + AGKRH + K+S K R+ R T V++ AD K+V R
Sbjct: 1 MPKMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAVVSKADLKRVKR 60
Query: 61 NYLPN 65
L
Sbjct: 61 LLLYA 65
>gnl|CDD|145004 pfam01632, Ribosomal_L35p, Ribosomal protein L35.
Length = 61
Score = 45.0 bits (107), Expect = 4e-06
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
PKMKT ++ KRF TA+GK++ + AGKRH + K+S K R R ++++ D+K+V +
Sbjct: 1 PKMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKHVLVSKTDSKRVDK 59
>gnl|CDD|177032 CHL00103, rpl35, ribosomal protein L35.
Length = 65
Score = 38.1 bits (89), Expect = 6e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKV 58
MPK+KT ++ KR+ T GK + A K H + K+S+K R T+ ++ D+K +
Sbjct: 1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSI 58
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the conversion of this
intermediate to thiamine pyrophosphate. The N-terminal
domain of ThiL binds ATP and is related to the
ATP-binding domains of hydrogen expression/formation
protein HypE, the AIR synthases, FGAM synthase and
selenophosphate synthetase (SelD)..
Length = 291
Score = 27.5 bits (62), Expect = 0.84
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 6 TNSSSKKRFSITATGKVRAQAAGKRHG 32
T S S+ S+TA G+V +R G
Sbjct: 119 TTSGSELVISVTALGEVEKGKPLRRSG 145
>gnl|CDD|37485 KOG2274, KOG2274, KOG2274, Predicted importin 9 [Intracellular
trafficking, secretion, and vesicular transport,
Nuclear structure].
Length = 1005
Score = 26.1 bits (57), Expect = 2.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 51 ASADAKKVIRNYLPNGI 67
S + K +IR L N +
Sbjct: 83 VSEEVKALIREQLLNLL 99
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 26.1 bits (58), Expect = 2.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 19 TGKVRAQAAGKRHGMIKRSNKFIRNA 44
G+ AQA G+ GM++R+ I A
Sbjct: 68 MGRPIAQAGGEIRGMLERARYMISIA 93
>gnl|CDD|111392 pfam02488, EMA, Merozoite Antigen. This family represents the
immunodominant surface antigen of Theileria parasites
including equi merozoite antigen-1 (EMA-1) and equi
merozoite antigen-2 (EMA-2). The protein shows variation
at a putative glycosylation site, a potential mechanism
for host immune response evasion.
Length = 280
Score = 24.7 bits (54), Expect = 6.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 10 SKKRFSITATGKVRAQAAGKRHGMIKRSN-KFIRNARGTMVLASADAKKVIR-NYLPNG 66
S K+++ AT KV GK + N K++ V D KKV+R +Y G
Sbjct: 162 SGKKYTFKATFKVSKVTFGK-KDVGDGDNAKYL----DVFVYVGGDDKKVVRLDYFYTG 215
>gnl|CDD|88584 cd04333, ProX_deacylase, This CD, composed mainly of bacterial
single-domain proteins, includes the Thermus
thermophilus (Tt) YbaK-like protein, a homolog of the
trans-acting Escherichia coli YbaK Cys-tRNA(Pro)
deacylase and the Agrobacterium tumefaciens ProX
Ala-tRNA(Pro) deacylase and also the cis-acting
prolyl-tRNA synthetase-editing domain (ProRS-INS).
While ProX and ProRS-INS hydrolyze misacylated
Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated
Cys-tRNA(Pro). A few CD members are N-terminal,
YbaK-ProX-like domains of an uncharacterized protein
with a C-terminal, predicted Fe-S protein domain..
Length = 148
Score = 24.7 bits (54), Expect = 6.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 17 TATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAK 56
T T + A+A G G I +S F + +V+ S DA+
Sbjct: 24 TRTAALAAEALGCEPGQIAKSLVFRVDDEPVLVVTSGDAR 63
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 24.2 bits (53), Expect = 8.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 17 TATGKVRAQAAGKR 30
TATG+V A+ AG+R
Sbjct: 205 TATGRVVAERAGRR 218
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.127 0.342
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 678,451
Number of extensions: 24417
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 67
Length of database: 6,263,737
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,442,595
Effective search space: 157835255
Effective search space used: 157835255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)