RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35
[Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>gnl|CDD|178913 PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.
          Length = 65

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 1  MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          MPKMKT S + KRF +T +GKV+ + AGKRH + K+S K  R  RGT V++ ADAK+V R
Sbjct: 1  MPKMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKKSTKRKRQLRGTTVVSKADAKRVKR 60

Query: 61 NYLPNG 66
            LP  
Sbjct: 61 -MLPYA 65


>gnl|CDD|129113 TIGR00001, rpmI_bact, ribosomal protein L35.  This ribosomal
          protein is found in bacteria and organelles only. It is
          not closely related to any eukaryotic or archaeal
          ribosomal protein.
          Length = 63

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT+ ++ KRF IT +GK++ + AGKRH + K+S+K  RN R   ++++ D K+V  
Sbjct: 1  PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKAIVSAGDLKRVKL 59


>gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
          Length = 318

 Score = 26.0 bits (58), Expect = 2.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 6   TNSSSKKRFSITATGKVRAQAAGKRHG 32
           T        S+TA G V    A +R G
Sbjct: 122 TTRGPDLSISVTAIGDVPGGRALRRSG 148


>gnl|CDD|181827 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
          Length = 524

 Score = 25.6 bits (57), Expect = 3.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 17  TATGKVRAQAAGKR 30
           TATG+V A+ AG+R
Sbjct: 241 TATGRVLAEQAGRR 254


>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
          Length = 460

 Score = 25.5 bits (57), Expect = 3.3
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 13  RFSITATGKVRAQAAGKRHGMIK 35
                A G  RA+  GK  G +K
Sbjct: 372 EVPFEAQG--RARVMGKNDGFVK 392


>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
           Provisional.
          Length = 1037

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 21  KVRAQAAGKRHGMIKRSNK-FIRNARGTMVLASADA 55
           KV  QAA     +    N  ++RN  G MV  SA A
Sbjct: 768 KVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFA 803


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 990,020
Number of extensions: 45770
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 11
Length of query: 67
Length of database: 5,994,473
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,173,369
Effective search space: 150027701
Effective search space used: 150027701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)