RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35 [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >3i1n_3 50S ribosomal protein L35; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_3 1vs6_3 3i1p_3 3i1r_3 3i1t_3 3i20_3 3i22_3 2qam_3* 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* ... (3:) Length = 65 Score = 64.7 bits (158), Expect = 4e-12 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 MPK+KT + KRF T G + + A RH + K++ K R+ R +++ D VI Sbjct: 1 MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 60 Query: 61 NYLPNG 66 LP Sbjct: 61 -CLPYA 65 >2j01_8 50S ribosomal protein L35; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (8:) Length = 65 Score = 64.3 bits (157), Expect = 6e-12 Identities = 28/60 (46%), Positives = 37/60 (61%) Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 MPKMKT+ +KKR ITA+GKV A GKRH ++S K IR VLA +A+++ Sbjct: 1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 60 >2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (3:) Length = 66 Score = 63.9 bits (156), Expect = 8e-12 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 MPKMKT+ +K+R IT TGKV A +GKRH +S IR VLA A+ + ++ Sbjct: 1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWAR-MK 59 Query: 61 NYLPNG 66 LP G Sbjct: 60 LMLPRG 65 >3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (5:) Length = 159 Score = 58.4 bits (141), Expect = 3e-10 Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 KMKT+ +S KRF +T GK+ + AGK+H + K++ K + + +D VI Sbjct: 89 GYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIG 148 >3gn6_A CT0912, orfan protein with A ferrodoxin-like domain repeat; orfan protein from chlorobium tepidum with A ferrodoxin-like domain repeat; HET: 2PE; 1.80A {Chlorobium tepidum tls} (A:) Length = 321 Score = 25.8 bits (56), Expect = 2.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 36 RSNKFIRNARGTMVLASADAKKVIRNYLPNGI 67 R N++ R A T +L +A A +R Y+ +G+ Sbjct: 245 RDNRYYRKALSTEILRNAHADGGLRAYIXHGV 276 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.127 0.342 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 444,233 Number of extensions: 14019 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 5 Length of query: 67 Length of database: 4,956,049 Length adjustment: 34 Effective length of query: 33 Effective length of database: 3,806,679 Effective search space: 125620407 Effective search space used: 125620407 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.1 bits)