HHsearch alignment for GI: 254780320 and conserved domain: TIGR00168

>TIGR00168 infC translation initiation factor IF-3; InterPro: IPR001288 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit . The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 . ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=99.97  E-value=3.4e-30  Score=201.06  Aligned_cols=135  Identities=45%  Similarity=0.788  Sum_probs=132.5

Q ss_pred             CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf             93378579949999887558779998457888888765432110022222002689740086799999999999960379
Q gi|254780320|r    1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGC   80 (136)
Q Consensus         1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~   80 (136)
T Consensus        29 ~~~~~~~~~dl~~~~~~~~pp~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~  108 (165)
T TIGR00168        29 LELAEEAGLDLVLVSPNAKPPVCKLLDYGKYKYEQEKKAKEAKKNQKVIELKEVKLRPTIDEHDLEFKLKNALGFLEKGD  108 (165)
T ss_pred             HHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             76664316525763377887532211021023344555665543100111111001133221023456787777763587


Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEEEECC
Q ss_conf             1999999709743573568999999999842243203677-324876999992046
Q gi|254780320|r   81 KVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP-KFEGRQMIMILSSKC  135 (136)
Q Consensus        81 kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~p-k~~Gr~~~~~l~Pkk  135 (136)
T Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~  164 (165)
T TIGR00168       109 KVKFTVRFRGRELTHSELGLDVLDRFLEDLADLAEVEKPPTKLEGRSLFLLLAPKK  164 (165)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             04788763230345778889999999987666654322110110102334430346