HHsearch alignment for GI: 254780320 and conserved domain: TIGR00168
>TIGR00168 infC translation initiation factor IF-3; InterPro: IPR001288 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit . The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 . ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=99.97 E-value=3.4e-30 Score=201.06 Aligned_cols=135 Identities=45% Similarity=0.788 Sum_probs=132.5
Q ss_pred CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 93378579949999887558779998457888888765432110022222002689740086799999999999960379
Q gi|254780320|r 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGC 80 (136)
Q Consensus 1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~ 80 (136)
T Consensus 29 ~~~~~~~~~dl~~~~~~~~pp~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~ 108 (165)
T TIGR00168 29 LELAEEAGLDLVLVSPNAKPPVCKLLDYGKYKYEQEKKAKEAKKNQKVIELKEVKLRPTIDEHDLEFKLKNALGFLEKGD 108 (165)
T ss_pred HHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 76664316525763377887532211021023344555665543100111111001133221023456787777763587
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEEEECC
Q ss_conf 1999999709743573568999999999842243203677-324876999992046
Q gi|254780320|r 81 KVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP-KFEGRQMIMILSSKC 135 (136)
Q Consensus 81 kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~p-k~~Gr~~~~~l~Pkk 135 (136)
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 164 (165)
T TIGR00168 109 KVKFTVRFRGRELTHSELGLDVLDRFLEDLADLAEVEKPPTKLEGRSLFLLLAPKK 164 (165)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 04788763230345778889999999987666654322110110102334430346