HHsearch alignment for GI: 254780320 and conserved domain: pfam00707
>pfam00707 IF3_C Translation initiation factor IF-3, C-terminal domain.
Probab=99.96 E-value=5e-30 Score=200.05 Aligned_cols=87 Identities=52% Similarity=0.866 Sum_probs=85.1
Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 22200268974008679999999999996037919999997097435735689999999998422432036773248769
Q gi|254780320|r 48 STGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQM 127 (136)
Q Consensus 48 ~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~ 127 (136)
T Consensus 1 ~v~~KEir~~~~I~~hDl~~K~k~a~~FL~~G~kVKv~i~frGRE~~~~e~g~~~l~~i~~~l~~~~~ve~~pk~eGr~~ 80 (87)
T pfam00707 1 VVQVKEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIAHPELGRELLDRFAEDLEDIATVEKPPKMEGRNM 80 (87)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEE
T ss_conf 95778999726877015999999999999779949999998487565889999999999998551537515876548759
Q ss_pred EEEEEEC
Q ss_conf 9999204
Q gi|254780320|r 128 IMILSSK 134 (136)
Q Consensus 128 ~~~l~Pk 134 (136)
T Consensus 81 ~~~l~Pk 87 (87)
T pfam00707 81 TMILAPK 87 (87)
T ss_pred EEEEECC
T ss_conf 9999369