Query         gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 136
No_of_seqs    113 out of 1373
Neff          5.6 
Searched_HMMs 33803
Date          Wed Jun  1 12:03:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780320.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2ife_A Protein (translation i 100.0   4E-31 1.2E-35  206.2   7.3   97   39-135     1-98  (100)
  2 >1tig_A IF3-C, translation ini 100.0 1.6E-30 4.8E-35  202.6   8.4   91   45-135     1-91  (94)
  3 >2crq_A Mitochondrial translat 100.0 1.8E-30 5.4E-35  202.3   8.0   97   39-135     3-101 (112)
  4 >1i96_V Translation initiation 100.0 9.6E-30 2.8E-34  198.0  10.0   86   50-135     1-86  (89)
  5 >1tif_A IF3-N, translation ini  99.7 1.8E-17 5.2E-22  124.8   4.6   44    1-44     35-78  (78)
  6 >1w96_A ACC, acetyl-coenzyme A  13.5      56  0.0017   14.6   0.4   30   13-42     49-78  (118)
  7 >2yw2_A Phosphoribosylamine--g  11.7      74  0.0022   13.9   0.6   13    4-16     58-70  (97)
  8 >3cta_A Riboflavin kinase; str  11.5      87  0.0026   13.4   0.9   20   76-95    119-138 (139)
  9 >2q7d_A Inositol-tetrakisphosp  11.4 1.1E+02  0.0033   12.8   1.5   25    2-26     40-68  (111)
 10 >1ntv_A Disabled homolog 1; be  10.5 1.2E+02  0.0035   12.6   3.8   57   79-135    15-71  (152)

No 1  
>>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} (A:)
Probab=99.97  E-value=4e-31  Score=206.19  Aligned_cols=97  Identities=45%  Similarity=0.724  Sum_probs=93.8

Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             43211002222200268974008679999999999996037919999997097435735689999999998422432036
Q gi|254780320|r   39 AVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDC  118 (136)
Q Consensus        39 ~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~  118 (136)
                      .++++++|+.+++|||+|+|+||+|||++|++++++||++||+|+|+|+|||||++|+|.|.++|++|+++|+++|++|+
T Consensus         1 lke~kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVkv~i~~rGRe~~~~e~g~~ll~~i~~~l~~~~~~e~   80 (100)
T 2ife_A            1 MEFQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES   80 (100)
T ss_dssp             ---------CCEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEESC
T ss_pred             CCHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf             92132057750478899735857537999999999999779969999998153002888999999999998531307824


Q ss_pred             CC-CCCCCEEEEEEEECC
Q ss_conf             77-324876999992046
Q gi|254780320|r  119 EP-KFEGRQMIMILSSKC  135 (136)
Q Consensus       119 ~p-k~~Gr~~~~~l~Pkk  135 (136)
                      .| +++|++|+|+|+|++
T Consensus        81 ~p~~~~G~~~~~~l~P~k   98 (100)
T 2ife_A           81 FPTKIEGRQMIMVLAPKK   98 (100)
T ss_dssp             CCCCCCSSCCEEEEEECC
T ss_pred             CCCCCCCCEEEEEEECCC
T ss_conf             676556873999993179


No 2  
>>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} (A:)
Probab=99.97  E-value=1.6e-30  Score=202.58  Aligned_cols=91  Identities=37%  Similarity=0.750  Sum_probs=89.1

Q ss_pred             CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             02222200268974008679999999999996037919999997097435735689999999998422432036773248
Q gi|254780320|r   45 KQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEG  124 (136)
Q Consensus        45 kq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~G  124 (136)
                      ||+.+++|||+|||+||+|||++|++|+++||++||+|+|+|+|||||++|+|.|.++|++|+++|+++|++|++|+++|
T Consensus         1 Kq~~~~iKEi~~~~~I~~hDl~~K~k~~~~FL~~G~kVkv~i~frGRe~~~~e~g~~ll~ri~~~l~~~~~~e~~pk~~G   80 (94)
T 1tig_A            1 KQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDG   80 (94)
T ss_dssp             ----CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEET
T ss_pred             CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCC
T ss_conf             98436889999735867307999999999998516819999998676444867899999999997112338614776538


Q ss_pred             CEEEEEEEECC
Q ss_conf             76999992046
Q gi|254780320|r  125 RQMIMILSSKC  135 (136)
Q Consensus       125 r~~~~~l~Pkk  135 (136)
                      ++|+|+|+|++
T Consensus        81 ~~~~~~l~P~k   91 (94)
T 1tig_A           81 RNMFLVLAPKN   91 (94)
T ss_dssp             TEEEEEEEESC
T ss_pred             CEEEEEEEECC
T ss_conf             77999996379


No 3  
>>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=99.96  E-value=1.8e-30  Score=202.28  Aligned_cols=97  Identities=21%  Similarity=0.311  Sum_probs=94.3

Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             43211002222200268974008679999999999996037919999997097435735689999999998422432036
Q gi|254780320|r   39 AVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDC  118 (136)
Q Consensus        39 ~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~  118 (136)
                      +++++++|+.+.+|||+|+|+||+|||++|++++++||++||+|+|+|+|||||++|+|.|.++|++|.++|+|+|++|+
T Consensus         3 ~ke~kkkq~~~~~KEi~~~~~I~~hDl~~Klk~~~~FLekG~kVkv~i~frGRe~~~~e~g~~il~~i~~~l~~~~~~e~   82 (112)
T 2crq_A            3 SGSSGPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQILQTMPDIATFSS   82 (112)
T ss_dssp             CCCCCCCCCCSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCTTCSCCHHHHHHHHHHHHTTSTTTCEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf             76788888884778999725867307999999999999789989999998774355789999999999998434625625


Q ss_pred             CCCC--CCCEEEEEEEECC
Q ss_conf             7732--4876999992046
Q gi|254780320|r  119 EPKF--EGRQMIMILSSKC  135 (136)
Q Consensus       119 ~pk~--~Gr~~~~~l~Pkk  135 (136)
                      +|++  +|++|+|+|.|++
T Consensus        83 ~pk~~~~G~~~~~~l~P~k  101 (112)
T 2crq_A           83 RPKAIRGGTASMCVFRHLS  101 (112)
T ss_dssp             EEEEEGGGTEEEEEEECCS
T ss_pred             CCCCCCCCCEEEEEECCCC
T ss_conf             7754788886999981688


No 4  
>>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} (V:)
Probab=99.96  E-value=9.6e-30  Score=197.95  Aligned_cols=86  Identities=38%  Similarity=0.713  Sum_probs=84.6

Q ss_pred             CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             20026897400867999999999999603791999999709743573568999999999842243203677324876999
Q gi|254780320|r   50 GIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIM  129 (136)
Q Consensus        50 ~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~~  129 (136)
                      ++|||+|+|+||+|||++|++||++||++||+|+|+|+|||||++|+|.|.++|++|+++|+++|++|++|+++|++|+|
T Consensus         1 ~iKEirl~~~I~~hDl~~K~k~a~~FL~~G~kVkv~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~p~~~G~~~~~   80 (89)
T 1i96_V            1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM   80 (89)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEE
T ss_conf             96159960687702599999999999967996999999738767588999999999999721340753587651877999


Q ss_pred             EEEECC
Q ss_conf             992046
Q gi|254780320|r  130 ILSSKC  135 (136)
Q Consensus       130 ~l~Pkk  135 (136)
                      +|+|++
T Consensus        81 ~l~Pkk   86 (89)
T 1i96_V           81 LLAPVK   86 (89)
T ss_pred             EEEECC
T ss_conf             992068


No 5  
>>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=99.69  E-value=1.8e-17  Score=124.84  Aligned_cols=44  Identities=43%  Similarity=0.745  Sum_probs=41.9

Q ss_pred             CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf             93378579949999887558779998457888888765432110
Q gi|254780320|r    1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARK   44 (136)
Q Consensus         1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kk   44 (136)
                      |++|++.|||||+|||+++||||||||||||+||++++.++++|
T Consensus        35 l~~A~~~~lDLV~v~~~~~PPVckimdygK~~ye~~kk~ke~kK   78 (78)
T 1tif_A           35 LEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK   78 (78)
T ss_dssp             HHHHHHTTCEEEEEETTSSSCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             99999816787984477899889997523489999988987259


No 6  
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:437-554)
Probab=13.48  E-value=56  Score=14.56  Aligned_cols=30  Identities=23%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             EECCCCCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf             998875587799984578888887654321
Q gi|254780320|r   13 EIDSSVTPSVCKILDLRKLRYTIQKNAVEA   42 (136)
Q Consensus        13 ~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~   42 (136)
                      +|+|.-+|.++||+-||.-+-+.-.+.+.+
T Consensus        49 ~i~~~yD~miAKiiv~g~~R~~Ai~~l~~a   78 (118)
T 1w96_A           49 NIHSFSDSQFGHIFAFGENRQASRKHMVVA   78 (118)
T ss_dssp             SSCSSCSEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHEEEEECCCHHHHHHHHHHH
T ss_conf             569887662417989779999999999998


No 7  
>>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A (A:1-97)
Probab=11.72  E-value=74  Score=13.86  Aligned_cols=13  Identities=15%  Similarity=0.376  Sum_probs=4.7

Q ss_pred             HHHCCCCEEEECC
Q ss_conf             7857994999988
Q gi|254780320|r    4 AQEANLDLVEIDS   16 (136)
Q Consensus         4 A~~~~lDLV~vs~   16 (136)
                      |++.+.|||.|.|
T Consensus        58 a~~~~iDlvviGP   70 (97)
T 2yw2_A           58 AKNEGVDFTIVGP   70 (97)
T ss_dssp             HHHHTCSEEEECS
T ss_pred             HHHHCCCEEEECC
T ss_conf             9985989999898


No 8  
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:92-230)
Probab=11.46  E-value=87  Score=13.42  Aligned_cols=20  Identities=35%  Similarity=0.531  Sum_probs=13.8

Q ss_pred             HCCCCCEEEEEEECCCCCCC
Q ss_conf             60379199999970974357
Q gi|254780320|r   76 LRDGCKVKISVKFRGREIMH   95 (136)
Q Consensus        76 L~~G~kVki~i~frGRe~~~   95 (136)
                      |.+|+.|+|.|-.-|-|..|
T Consensus       119 LkDGD~V~I~i~~~~~~~~~  138 (139)
T 3cta_A          119 LHDGDRVSVEVYTEGHHHHH  138 (139)
T ss_dssp             ----CEEEEEECC-------
T ss_pred             CCCCCEEEEEEECCCCCCCC
T ss_conf             88999899999807755557


No 9  
>>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X (A:1-111)
Probab=11.44  E-value=1.1e+02  Score=12.82  Aligned_cols=25  Identities=12%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             HHHHHCCCCEEEECCCC----CCCEEEEE
Q ss_conf             33785799499998875----58779998
Q gi|254780320|r    2 QMAQEANLDLVEIDSSV----TPSVCKIL   26 (136)
Q Consensus         2 ~~A~~~~lDLV~vs~~~----~PPVcKi~   26 (136)
                      .+|++.|++||.|+++.    +=|..=|+
T Consensus        40 ~~~~~~Gi~lV~ID~~~pL~~QGPfDvIl   68 (111)
T 2q7d_A           40 ELCRKRGMEVVQLNLSRPIEEQGPLDVII   68 (111)
T ss_dssp             HHHHTTTCEEEECCTTSCSGGGCCCSEEE
T ss_pred             HHHHHCCCEEEEECCCCCHHHCCCCEEEE
T ss_conf             99997899799964999956749845999


No 10 
>>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} (A:)
Probab=10.45  E-value=1.2e+02  Score=12.62  Aligned_cols=57  Identities=12%  Similarity=0.119  Sum_probs=38.2

Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECC
Q ss_conf             791999999709743573568999999999842243203677324876999992046
Q gi|254780320|r   79 GCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIMILSSKC  135 (136)
Q Consensus        79 G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~~~l~Pkk  135 (136)
                      +..+.+.+.+-|..-.....|.+.+.+-+..+..............+.+.+.++|.-
T Consensus        15 ~~~~~f~v~YLGs~~v~~~~g~~~~~~ai~~i~~~~~~~~~~~~~~~~v~L~Vs~~g   71 (152)
T 1ntv_A           15 GEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGG   71 (152)
T ss_dssp             TTCEEEEEEEEEEEECSSSCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCE
T ss_conf             998599999988999178899799999999999875211111577856999996366


Done!