RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780320|ref|YP_003064733.1| translation initiation factor
IF-3 [Candidatus Liberibacter asiaticus str. psy62]
(136 letters)
>gnl|CDD|30638 COG0290, InfC, Translation initiation factor 3 (IF-3) [Translation,
ribosomal structure and biogenesis].
Length = 176
Score = 151 bits (382), Expect = 8e-38
Identities = 67/134 (50%), Positives = 96/134 (71%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
+++A+EA LDLVEI + P VCKI+D K +Y +K A EA+KKQK +KE+K+RP I
Sbjct: 40 LKLAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKAKEAKKKQKQIQVKEIKLRPKI 99
Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
D HD + KLK FL G KVK++++FRGRE+ HQ+LG ++L + E +I++++ EP
Sbjct: 100 DEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLEDIAKVESEP 159
Query: 121 KFEGRQMIMILSSK 134
K EGRQMIM+L+ K
Sbjct: 160 KMEGRQMIMVLAPK 173
>gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional.
Length = 182
Score = 111 bits (279), Expect = 7e-26
Identities = 60/136 (44%), Positives = 83/136 (61%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
+Q+A LDLV + P VC+I+D K ++T +K A EA+KKQ ++ IKEVKMR I
Sbjct: 46 IQLAANQGLDLVLVSEKSDPPVCRIIDYGKYKFTQEKRAKEAKKKQHNSSIKEVKMRYKI 105
Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
+ HD +V++ FL+ G KVK ++ FRGREI H +L LL+ + I+ I P
Sbjct: 106 EEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQPP 165
Query: 121 KFEGRQMIMILSSKCV 136
+GR MIMILS K V
Sbjct: 166 SQDGRNMIMILSPKKV 181
>gnl|CDD|144345 pfam00707, IF3_C, Translation initiation factor IF-3, C-terminal
domain.
Length = 87
Score = 110 bits (277), Expect = 2e-25
Identities = 45/84 (53%), Positives = 59/84 (70%)
Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
+KE+K+RP ID HDL+VKLK FL G KVK++++FRGREI H +LGRELL E
Sbjct: 4 VKEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIAHPELGRELLDRFAEDL 63
Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134
+I+ ++ PK EGR M MIL+ K
Sbjct: 64 EDIATVEKPPKMEGRNMTMILAPK 87
>gnl|CDD|147407 pfam05198, IF3_N, Translation initiation factor IF-3, N-terminal
domain.
Length = 76
Score = 52.1 bits (126), Expect = 4e-08
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEAR 43
+++A+E LDLVEI + P VCKI+D K +Y QK A EA+
Sbjct: 34 LRLAEEKGLDLVEISPNADPPVCKIMDYGKFKYEQQKKAKEAK 76
>gnl|CDD|146660 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreductin 1 (ERO1).
Members of this family are required for the formation of
disulphide bonds in the ER.
Length = 350
Score = 26.9 bits (60), Expect = 2.0
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 64 DLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRI-DC 118
+ ++ LK + L F + D +L + RF ISRI DC
Sbjct: 239 ETKLLLKDLLSELNSSS----PKHFDENLLFKNDEAIKLKEEFRRRFRNISRIMDC 290
>gnl|CDD|37662 KOG2451, KOG2451, KOG2451, Aldehyde dehydrogenase [Energy
production and conversion].
Length = 503
Score = 26.0 bits (57), Expect = 3.4
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 2 QMAQEAN-----LDLVEIDSSVTPSVCKIL----DLRKLRYTIQKNAVEARKKQKSTGIK 52
++A+EA L+++ D+S + K L D+RK+ +T N + Q ++ +K
Sbjct: 207 KLAEEAGIPAGVLNVITADASNAAEIGKELCTSPDVRKISFTGSTNVGKILMAQSASTVK 266
Query: 53 EVKMR-----PVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRG 90
+V + P I D + +A++G + + KFR
Sbjct: 267 KVSLELGGNAPFIVFDDADLD-QAVEGAM--------ACKFRN 300
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea..
Length = 778
Score = 25.6 bits (57), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 58 PVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREI 93
PV D L ++ D DG V++SV+ GR +
Sbjct: 153 PVNDFEQLPLEP-VRD---ADGEPVRVSVELPGRTV 184
>gnl|CDD|39507 KOG4306, KOG4306, KOG4306, Glycosylphosphatidylinositol-specific
phospholipase C [Signal transduction mechanisms].
Length = 306
Score = 25.3 bits (55), Expect = 5.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 64 DLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDC 118
+ L + FL + + + ++FR M + R+L+ IK+ FG+I D
Sbjct: 109 PVLEVLNEVRQFLSEHPEEVVILEFRHFFGMTEPHHRKLVLVIKQGFGDILCDDS 163
>gnl|CDD|73385 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase (HisA)
and the cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). The ProFAR isomerase catalyzes the
fourth step in histidine biosynthesis, an isomerisation
of the aminoaldose moiety of ProFAR to the aminoketose
of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene. The Imidazole glycerol phosphate synthase (IGPS)
catalyzes the fifth step of histidine biosynthesis, the
formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole
glycerol phosphate (ImGP) and
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR). This conversion involves two tightly coupled
reactions in distinct active sites of IGPS. The two
catalytic domains can be fused, like in fungi and
plants, or peformed by a heterodimer (HisH-glutaminase
and HisF-cyclase), like in bacteria..
Length = 233
Score = 25.2 bits (55), Expect = 6.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 55 KMRPVIDLHDLQVK 68
++ PVIDL D V
Sbjct: 1 RIIPVIDLKDGVVV 14
>gnl|CDD|39116 KOG3913, KOG3913, KOG3913, Wnt family of developmental regulators
[Signal transduction mechanisms].
Length = 356
Score = 24.9 bits (54), Expect = 8.1
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 33 YTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCK 81
+ ++AR+K+K R +++LH+ + KA+ +R CK
Sbjct: 169 IRFSRKFLDAREKRKD-------ARALMNLHNNEAGRKAVKKNMRRECK 210
>gnl|CDD|38265 KOG3055, KOG3055, KOG3055,
Phosphoribosylformimino-5-aminoimidazole carboxamide
ribonucleotide (ProFAR) isomerase [Amino acid transport
and metabolism].
Length = 263
Score = 24.6 bits (53), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRD 78
I + RP ID+H +VK + + G LRD
Sbjct: 4 ISATQFRPCIDIHKGKVK-QIVGGTLRD 30
>gnl|CDD|30360 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family [Amino acid transport and metabolism].
Length = 305
Score = 24.6 bits (53), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 41 EARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISV 86
E + GI+ + R V +L + V +AID DG V +S+
Sbjct: 184 ERAAVARERGIRVLTARDVDELGLVDVIEEAIDELKGDGDPVYLSI 229
>gnl|CDD|37819 KOG2608, KOG2608, KOG2608, Endoplasmic reticulum
membrane-associated oxidoreductin involved in disulfide
bond formation [Posttranslational modification, protein
turnover, chaperones, Intracellular trafficking,
secretion, and vesicular transport].
Length = 469
Score = 24.6 bits (53), Expect = 8.8
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 96 QDLGRELLSNIKERFGEISRI-DC 118
L ++ F ISRI DC
Sbjct: 332 DSEAPALKEEFRKHFRNISRIMDC 355
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.138 0.382
Gapped
Lambda K H
0.267 0.0859 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,509,092
Number of extensions: 72133
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 18
Length of query: 136
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,448,581
Effective search space: 231326212
Effective search space used: 231326212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.6 bits)