RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter asiaticus str. psy62] (136 letters) >gnl|CDD|30638 COG0290, InfC, Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]. Length = 176 Score = 151 bits (382), Expect = 8e-38 Identities = 67/134 (50%), Positives = 96/134 (71%) Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60 +++A+EA LDLVEI + P VCKI+D K +Y +K A EA+KKQK +KE+K+RP I Sbjct: 40 LKLAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKAKEAKKKQKQIQVKEIKLRPKI 99 Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120 D HD + KLK FL G KVK++++FRGRE+ HQ+LG ++L + E +I++++ EP Sbjct: 100 DEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLEDIAKVESEP 159 Query: 121 KFEGRQMIMILSSK 134 K EGRQMIM+L+ K Sbjct: 160 KMEGRQMIMVLAPK 173 >gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional. Length = 182 Score = 111 bits (279), Expect = 7e-26 Identities = 60/136 (44%), Positives = 83/136 (61%) Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60 +Q+A LDLV + P VC+I+D K ++T +K A EA+KKQ ++ IKEVKMR I Sbjct: 46 IQLAANQGLDLVLVSEKSDPPVCRIIDYGKYKFTQEKRAKEAKKKQHNSSIKEVKMRYKI 105 Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120 + HD +V++ FL+ G KVK ++ FRGREI H +L LL+ + I+ I P Sbjct: 106 EEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQPP 165 Query: 121 KFEGRQMIMILSSKCV 136 +GR MIMILS K V Sbjct: 166 SQDGRNMIMILSPKKV 181 >gnl|CDD|144345 pfam00707, IF3_C, Translation initiation factor IF-3, C-terminal domain. Length = 87 Score = 110 bits (277), Expect = 2e-25 Identities = 45/84 (53%), Positives = 59/84 (70%) Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110 +KE+K+RP ID HDL+VKLK FL G KVK++++FRGREI H +LGRELL E Sbjct: 4 VKEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIAHPELGRELLDRFAEDL 63 Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134 +I+ ++ PK EGR M MIL+ K Sbjct: 64 EDIATVEKPPKMEGRNMTMILAPK 87 >gnl|CDD|147407 pfam05198, IF3_N, Translation initiation factor IF-3, N-terminal domain. Length = 76 Score = 52.1 bits (126), Expect = 4e-08 Identities = 21/43 (48%), Positives = 29/43 (67%) Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEAR 43 +++A+E LDLVEI + P VCKI+D K +Y QK A EA+ Sbjct: 34 LRLAEEKGLDLVEISPNADPPVCKIMDYGKFKYEQQKKAKEAK 76 >gnl|CDD|146660 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreductin 1 (ERO1). Members of this family are required for the formation of disulphide bonds in the ER. Length = 350 Score = 26.9 bits (60), Expect = 2.0 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 64 DLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRI-DC 118 + ++ LK + L F + D +L + RF ISRI DC Sbjct: 239 ETKLLLKDLLSELNSSS----PKHFDENLLFKNDEAIKLKEEFRRRFRNISRIMDC 290 >gnl|CDD|37662 KOG2451, KOG2451, KOG2451, Aldehyde dehydrogenase [Energy production and conversion]. Length = 503 Score = 26.0 bits (57), Expect = 3.4 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 23/103 (22%) Query: 2 QMAQEAN-----LDLVEIDSSVTPSVCKIL----DLRKLRYTIQKNAVEARKKQKSTGIK 52 ++A+EA L+++ D+S + K L D+RK+ +T N + Q ++ +K Sbjct: 207 KLAEEAGIPAGVLNVITADASNAAEIGKELCTSPDVRKISFTGSTNVGKILMAQSASTVK 266 Query: 53 EVKMR-----PVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRG 90 +V + P I D + +A++G + + KFR Sbjct: 267 KVSLELGGNAPFIVFDDADLD-QAVEGAM--------ACKFRN 300 >gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.. Length = 778 Score = 25.6 bits (57), Expect = 4.8 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 58 PVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREI 93 PV D L ++ D DG V++SV+ GR + Sbjct: 153 PVNDFEQLPLEP-VRD---ADGEPVRVSVELPGRTV 184 >gnl|CDD|39507 KOG4306, KOG4306, KOG4306, Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]. Length = 306 Score = 25.3 bits (55), Expect = 5.3 Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 64 DLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDC 118 + L + FL + + + ++FR M + R+L+ IK+ FG+I D Sbjct: 109 PVLEVLNEVRQFLSEHPEEVVILEFRHFFGMTEPHHRKLVLVIKQGFGDILCDDS 163 >gnl|CDD|73385 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.. Length = 233 Score = 25.2 bits (55), Expect = 6.1 Identities = 7/14 (50%), Positives = 9/14 (64%) Query: 55 KMRPVIDLHDLQVK 68 ++ PVIDL D V Sbjct: 1 RIIPVIDLKDGVVV 14 >gnl|CDD|39116 KOG3913, KOG3913, KOG3913, Wnt family of developmental regulators [Signal transduction mechanisms]. Length = 356 Score = 24.9 bits (54), Expect = 8.1 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Query: 33 YTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCK 81 + ++AR+K+K R +++LH+ + KA+ +R CK Sbjct: 169 IRFSRKFLDAREKRKD-------ARALMNLHNNEAGRKAVKKNMRRECK 210 >gnl|CDD|38265 KOG3055, KOG3055, KOG3055, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]. Length = 263 Score = 24.6 bits (53), Expect = 8.3 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRD 78 I + RP ID+H +VK + + G LRD Sbjct: 4 ISATQFRPCIDIHKGKVK-QIVGGTLRD 30 >gnl|CDD|30360 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]. Length = 305 Score = 24.6 bits (53), Expect = 8.7 Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 41 EARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISV 86 E + GI+ + R V +L + V +AID DG V +S+ Sbjct: 184 ERAAVARERGIRVLTARDVDELGLVDVIEEAIDELKGDGDPVYLSI 229 >gnl|CDD|37819 KOG2608, KOG2608, KOG2608, Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones, Intracellular trafficking, secretion, and vesicular transport]. Length = 469 Score = 24.6 bits (53), Expect = 8.8 Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%) Query: 96 QDLGRELLSNIKERFGEISRI-DC 118 L ++ F ISRI DC Sbjct: 332 DSEAPALKEEFRKHFRNISRIMDC 355 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.382 Gapped Lambda K H 0.267 0.0859 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,509,092 Number of extensions: 72133 Number of successful extensions: 162 Number of sequences better than 10.0: 1 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 18 Length of query: 136 Length of database: 6,263,737 Length adjustment: 84 Effective length of query: 52 Effective length of database: 4,448,581 Effective search space: 231326212 Effective search space used: 231326212 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (23.6 bits)