BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780320|ref|YP_003064733.1| translation initiation factor
IF-3 [Candidatus Liberibacter asiaticus str. psy62]
(136 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 136
Score = 274 bits (701), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI
Sbjct: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP
Sbjct: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
Query: 121 KFEGRQMIMILSSKCV 136
KFEGRQMIMILSSKCV
Sbjct: 121 KFEGRQMIMILSSKCV 136
>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 23.5 bits (49), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 33 YTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQ 66
++++ N AR +K T I + + ID HD+Q
Sbjct: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 189
Score = 22.7 bits (47), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMR 57
M++ + D +E DS+V + ++LD R +R + ++ + K GI + MR
Sbjct: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNR-VRPAVARDGGDIVFKGYRDGIVFLSMR 155
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 21.9 bits (45), Expect = 4.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 24/64 (37%)
Query: 28 LRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVK 87
L+KL YT ++A G V + P + D +A D L +K+
Sbjct: 318 LKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSP 377
Query: 88 FRGR 91
GR
Sbjct: 378 VDGR 381
>gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 21.9 bits (45), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 20 PSVCKI-LDLRKLRYTIQKNAVEARKKQ 46
P+V + L+L + RY N ++ARKK+
Sbjct: 171 PAVITVDLNLNEPRYISLPNIIKARKKR 198
>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 21.6 bits (44), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 59 VIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLG 99
+ ++VK + G +++ KIS G+E + +++G
Sbjct: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71
>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 21.2 bits (43), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 74 GFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
G+ R CK+ +V R+ G+E + + KE+F
Sbjct: 49 GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
>gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 278
Score = 21.2 bits (43), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 67 VKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGREL 102
V AIDG R + K G ++H G +L
Sbjct: 218 VASAAIDGIARQHSYMGADTKSAGETVVHSKEGMQL 253
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,032
Number of Sequences: 1233
Number of extensions: 2726
Number of successful extensions: 14
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 12
length of query: 136
length of database: 328,796
effective HSP length: 65
effective length of query: 71
effective length of database: 248,651
effective search space: 17654221
effective search space used: 17654221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)