HHsearch alignment for GI: 254780321 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=496.14 Aligned_cols=359 Identities=25% Similarity=0.446 Sum_probs=310.2
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 85253179998013898778899999982980544-------44311305867798719505232799997437884389
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER-------EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-----~~~~ 82 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-----ADCL 82 (528)
T ss_pred HHHHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEEC-----CCEE
T ss_conf 98643403688568888511889999723034305501222577634227788887568558765787603-----8848
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99961787300279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 86147998654323678999864104689860358668899999998505984699750236566886899999999857
Q ss_pred HHHH----------------------------------------------------------------------------
Q ss_conf 2232----------------------------------------------------------------------------
Q gi|254780321|r 160 ISTE---------------------------------------------------------------------------- 163 (606)
Q Consensus 160 ~~~~---------------------------------------------------------------------------- 163 (606)
T Consensus 163 i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~ 242 (528)
T COG4108 163 IQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDL 242 (528)
T ss_pred CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 75035524456885643223503587998426777654434444578886777762447999999999999741332088
Q ss_pred ---------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH-------HHCCCCCCCCCEE--ECC-CCCEEEEEEECCC
Q ss_conf ---------10001110022320067877632100011112-------2012331012101--147-5725999981698
Q gi|254780321|r 164 ---------DALLVSAKTGEGIPLLLERIVQQLPSPTSPEG-------ANAPLKALLIDSW--YNS-YLGVMVLVRIING 224 (606)
Q Consensus 164 ---------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~-------~~~Pl~alVfds~--~D~-~~G~I~~~RV~sG 224 (606)
T Consensus 243 ~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRV~SG 322 (528)
T COG4108 243 EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSG 322 (528)
T ss_pred HHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 98856960115703323115889999999963899865446667316887754348999974899433420367863056
Q ss_pred CCCCCCEEEEECCCCCCCCCCC-CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 7355845887335564210122-233554124010124712332201100244445420004667853236455222212
Q gi|254780321|r 225 QLTKGQSIRLMGTNAKYQVERI-GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPV 303 (606)
Q Consensus 225 ~lk~Gd~I~~~~~g~~~~v~~i-g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~ 303 (606)
T Consensus 323 kferGMk~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGD----IIGl~nhGt~~IGDT~t~Ge~~~f~giP~Fa---PE 395 (528)
T COG4108 323 KFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGD----IIGLHNHGTIQIGDTFTEGEKLKFTGIPNFA---PE 395 (528)
T ss_pred CCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCC----EEECCCCCCEEECCEECCCCEEEECCCCCCC---HH
T ss_conf 4358865330244872561610767642166575426877----6714678721326663158556536899879---99
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 664212677024578899998886411221112567600042028996376789888988866449506973782330
Q gi|254780321|r 304 VFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVY 381 (606)
Q Consensus 304 v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Y 381 (606)
T Consensus 396 lfrrvrlkd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d----~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~~~~ 469 (528)
T COG4108 396 LFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGND----LILGAVGQLQFEVVQARLKNEYNVEAVFEPVNFST 469 (528)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCC----CEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCEE
T ss_conf 999886178688899999999986557569960377888----65874100137999999876518707874055148