HHsearch alignment for GI: 254780321 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=99.19 E-value=6.1e-10 Score=86.23 Aligned_cols=143 Identities=31% Similarity=0.343 Sum_probs=96.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 218 ~v~i~G~PN~GKSSL~N~L~~~drAIVS~i--------------pGTTRD~ie~~l~l-----~G~~v~l~DTAGiR~t~ 278 (445)
T PRK05291 218 KVVIAGRPNVGKSSLLNALLGEERAIVTDI--------------AGTTRDVIEEHINL-----DGIPLRLIDTAGIRETE 278 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCC--------------CCCCCCEEEEEEEE-----CCEEEEEEECCCCCCCC
T ss_conf 699889998768999999857874673189--------------99740402236899-----99899999899766557
Q ss_pred HH-----HHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99-----9999973---026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 93 YE-----VSRSLSA---CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 93 ~E-----V~r~l~a---~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
T Consensus 279 d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~--~~~~~~~i~V~NK~DL~~~~~-------------~~~~ 343 (445)
T PRK05291 279 DEVEKIGIERSRKAIEEADLVLLVLDASEPLTEEDKEILE--EFKNKPVIVVLNKADLTGEKI-------------DGLP 343 (445)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHH--HCCCCCEEEEEEHHHCCCCCC-------------CCCC
T ss_conf 4588999999999998399999998799888722599998--517998799985120466534-------------7897
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 344 ~i~iSak~g~Gi~~L~~~i~~~~~~ 368 (445)
T PRK05291 344 VIRISAKTGEGIDELEEALKQLVGF 368 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 5999837886999999999999704