HHsearch alignment for GI: 254780321 and conserved domain: PRK13948
>PRK13948 shikimate kinase; Provisional.
Probab=94.27 E-value=0.43 Score=26.79 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 9888998525317999801389877889999998298054444311305867-798719505232799997437884389
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
T Consensus 1 ~~~~~~p-~~~~~IvLIG~mGsGKStiGk~LA~~l~--------~~fiD~D~~Ie~~~g~sI-----~e----------- 55 (182)
T PRK13948 1 MARLEVP-RPATFVALAGFMGTGKSRIGWELSRALA--------LHFVDTDKLITRVVGKSI-----PE----------- 55 (182)
T ss_pred CCCCCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCEEECHHHHHHHHCCCH-----HH-----------
T ss_conf 9866579-9998189889999988999999999969--------598888499999889399-----99-----------
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-----------CCCCCCC
Q ss_conf 999617873002799999997---30268999986878865589999999970996799832-----------6788753
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN-----------KADLPSA 145 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN-----------KiD~~~A 145 (606)
T Consensus 56 --IF~~~GE~~FR~~E~~~l~~l~~~~~--~VIStGGG~v-~~~~n~~~l~~~g--~vv~L~~~~~~i~~R~~~~~RPll 128 (182)
T PRK13948 56 --VFAQEGEEYFRACEKEVVRRVTRLDY--AVISLGGGTF-IHEENRRALLGRG--PVVVLWASPETVYQRTKHSDRPLL 128 (182)
T ss_pred --HHHHHCHHHHHHHHHHHHHHHHCCCC--EEEECCCCEE-CCHHHHHHHHHCC--EEEEEECCHHHHHHHCCCCCCCCC
T ss_conf --99984899999999999999974799--6997588500-5899999999689--899996999999988178999988
Q ss_pred CCCCHHHHHHHHHH----HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 21133888775553----22--3210001110022320067877632100
Q gi|254780321|r 146 DPDRVKKQIEETIG----IS--TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 146 ~~e~v~~ei~~~~g----~~--~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 129 ~~~~~~~~l~~l~~eR~~~Y~~A~~~I~t---d~~~~~eiv~~Ii~~L~a 175 (182)
T PRK13948 129 QVEDPLERIRTLMEEREPVYRQGTIHVHS---DGRPVEEIVEEVVERLWA 175 (182)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHHHH
T ss_conf 89987999999999999999967889889---989999999999999999