HHsearch alignment for GI: 254780321 and conserved domain: TIGR00491
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.92 E-value=1.1e-24 Score=185.26 Aligned_cols=310 Identities=28% Similarity=0.381 Sum_probs=188.2
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEE--EEEEEEEEE----ECCCCCEEE-------EE
Q ss_conf 99801389877889999998298054444311305867798719505--232799997----437884389-------99
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITI--KAQTVRLNY----TSTDAKDYQ-------LN 81 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITI--ka~~~~~~~----~~~~~~~y~-------iN 81 (606)
T Consensus 558 Givvh----nTTLLDkIR-ks-~Vv~kEAG-------------giTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLL 618 (1145)
T TIGR00491 558 GIVVH----NTTLLDKIR-KS-AVVKKEAG-------------GITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLL 618 (1145)
T ss_pred CEEEE----CCCCCCCCC-CC-CEEEECCC-------------CCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEE
T ss_conf 64785----143310003-34-01324778-------------8401006665466898651321211402578658015
Q ss_pred EEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCC------------
Q ss_conf 96178730027999999973026899998687886558999999997099679983267887-53211------------
Q gi|254780321|r 82 LIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP-SADPD------------ 148 (606)
Q Consensus 82 lIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~-~A~~e------------ 148 (606)
T Consensus 619 fIDTPGHeaFt~LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq 698 (1145)
T TIGR00491 619 FIDTPGHEAFTNLRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQ 698 (1145)
T ss_pred EEECCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 86078623442201001036301101341026984034899999612898728950330558896454885166665411
Q ss_pred --CHHHH----HHHH--------HHHHHHH------------HHHHHHHCCCCCCHHHHHHHHH----HHCCCCHHHHHC
Q ss_conf --33888----7755--------5322321------------0001110022320067877632----100011112201
Q gi|254780321|r 149 --RVKKQ----IEET--------IGISTED------------ALLVSAKTGEGIPLLLERIVQQ----LPSPTSPEGANA 198 (606)
Q Consensus 149 --~v~~e----i~~~--------~g~~~~~------------ii~vSAktG~GV~~LLd~Iv~~----iP~P~~~~~~~~ 198 (606)
T Consensus 699 ~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~~-~Lkl~~eG 777 (1145)
T TIGR00491 699 EQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLEE-KLKLEVEG 777 (1145)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-HCCEEECC
T ss_conf 16788668877898873022112588712255200001136898866567897489999998888899885-26742227
Q ss_pred CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCC-CCCCC-----EEEEHHCCCCCHHHHHHCCC
Q ss_conf 2331012101147572599998169873558458873355642101222-33554-----12401012471233220110
Q gi|254780321|r 199 PLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIG-ILTPK-----MIDIEALYPGEIGVMIASIK 272 (606)
Q Consensus 199 Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig-~~~~~-----~~~v~~l~aGdVG~ii~gik 272 (606)
T Consensus 778 ~AkGtiLEVKEe~GLG~T~DaviYdGilk~~D~iv~~~~d~v-ivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~k 856 (1145)
T TIGR00491 778 PAKGTILEVKEEKGLGVTIDAVIYDGILKKGDIIVLAGKDDV-IVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVK 856 (1145)
T ss_pred CCCEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCCCC-EEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEE
T ss_conf 865158987850689716999995577120788998138980-5766786348888368751043047521577320358
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 02444454200046678532364552222126642126770245788999988864112211125676000420289963
Q gi|254780321|r 273 EVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFL 352 (606)
Q Consensus 273 ~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~ggl 352 (606)
T Consensus 857 -v~-A~~~~~~----------~Ag----~P~-y~-v--~~~~~iek~~e~v~~E~e~---i~i~~--d~~yGvvvKADtL 911 (1145)
T TIGR00491 857 -VA-APELDKV----------LAG----SPI-YV-V--VSEEEIEKVKEEVLKEVEE---IKIET--DEEYGVVVKADTL 911 (1145)
T ss_pred -EC-CCCHHHH----------HCC----CCE-EE-E--ECCCHHHHHHHHHHHHHHH---HHHCC--CCCCEEEEEECCC
T ss_conf -72-7761045----------457----734-89-5--1782278999999876775---54213--6511179985585
Q ss_pred CHHHHHHHHHHHHHHCCCEEE
Q ss_conf 767898889888664495069
Q gi|254780321|r 353 GLLHLEIIQERLEREFSLNLI 373 (606)
Q Consensus 353 G~LHLeVi~eRL~rEfg~ev~ 373 (606)
T Consensus 912 GS--LEA~v~~Lr~~-~vpIk 929 (1145)
T TIGR00491 912 GS--LEALVNELRKE-GVPIK 929 (1145)
T ss_pred HH--HHHHHHHHHHC-CCCEE
T ss_conf 11--89999999857-89676