HHsearch alignment for GI: 254780321 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.21 E-value=4.5e-10 Score=87.11 Aligned_cols=151 Identities=31% Similarity=0.366 Sum_probs=90.4
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~L---t~~--~~~~~d~l----------FaTLd~t~r~~~l--~~~~--~~ll~DTVGFI 248 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNAL---TGA--DVYAADQL----------FATLDPTTRRLDL--PDGG--EVLLTDTVGFI 248 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHH---HHC--CCCCCCCC----------EEECCCCCCEEEC--CCCC--EEEEEECCCHH
T ss_conf 9976999667887789999998---517--76410343----------1353673204887--9997--69998150056
Q ss_pred H---------HHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 0---------279999999730268999986878-8655899999999709---96799832678875321133888775
Q gi|254780321|r 90 D---------FTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDNN---HEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 90 D---------F~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~---l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
T Consensus 249 ~~LP~~Li~aF~sTLee-~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~--~~-~~~~~- 323 (351)
T TIGR03156 249 RDLPHELVAAFRATLEE-VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDE--PR-IERLE- 323 (351)
T ss_pred HHCCHHHHHHHHHHHHH-HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCH--HH-HHHHH-
T ss_conf 30886799999999999-985989999805888478999999999999769999988999967015895--77-89987-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 5532232100011100223200678776321
Q gi|254780321|r 157 TIGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 157 ~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 324 ---~~~~~~v~ISA~~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 324 ---EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ---HCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ---3799879996899989999999999559