HHsearch alignment for GI: 254780321 and conserved domain: cd00154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.43 E-value=6.1e-12 Score=99.64 Aligned_cols=151 Identities=25% Similarity=0.331 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~--~~f~~~~-~~T----------ig~d~~--~~~~~---~~~~~~~l~iwDt~G~e~~~ 63 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD--GKFDENY-KST----------IGVDFK--SKTIE---IDGKTVKLQIWDTAGQERFR 63 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC-CCC----------CCEEEE--EEEEE---ECCEEEEEEEEECCCCHHHH
T ss_conf 899999699689999999970--9999984-886----------664799--99999---99999999999789826577
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999---999-997---0996799832678875321133888775553223210
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN---VYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~---~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
T Consensus 64 ~l~~~~~~~~d~~ilv~d~~~---~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~-v~~~~~~~~a~~~~~~~ 139 (159)
T cd00154 64 SITPSYYRGAHGAILVYDITN---RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ-VSTEEAQQFAKENGLLF 139 (159)
T ss_pred HHHHHHHHHCCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCC-CCHHHHHHHHHHCCCEE
T ss_conf 889999754127567244898---89999999999999986898882699997456301168-99999999999869979
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q ss_conf 00111002232006787763
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 140 ~e~SAk~~~~i~~~F~~i~~ 159 (159)
T cd00154 140 FETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEECCCCCCCHHHHHHHHHC
T ss_conf 99876888198999999869