HHsearch alignment for GI: 254780321 and conserved domain: cd00876
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=3.7e-12 Score=101.13 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=101.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 i~ivG~~~vGKTsli~r~~~--~~f~~~~~-pTi----------~~~~---~~~~~---~~~~~~~l~i~Dt~g~~~~~~ 62 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK--GTFVEEYD-PTI----------EDSY---RKTIV---VDGETYTLDILDTAGQEEFSA 62 (160)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC-CCE----------EEEE---EEEEE---ECCEEEEEEEEECCCCHHHHH
T ss_conf 99999699679999999961--95998778-830----------0489---99999---766999999997999623557
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-----70996799832678875321133888775553223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
T Consensus 63 ~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-V~~~e~~~~a~~~~~~y~e~ 141 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ-VSKEEGKALAKEWGCPFIET 141 (160)
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 88999764368999732898789999999999999972878862999997456223078-99999999999849979998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 142 Sak~g~nV~e~F~~i~~~i 160 (160)
T cd00876 142 SAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCCCHHHHHHHHHHHC
T ss_conf 4798949899999999729