HHsearch alignment for GI: 254780321 and conserved domain: cd00881

>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00  E-value=0  Score=345.38  Aligned_cols=173  Identities=40%  Similarity=0.616  Sum_probs=157.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf             7999801389877889999998298054444-311305867798719505232799997437884389999617873002
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF   91 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF   91 (606)
T Consensus         1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~-----~~~~i~~iDTPGh~~f   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-----PDRRVNFIDTPGHEDF   75 (189)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEE-----CCEEEEEEECCCCHHH
T ss_conf             98999179989999999999764723568625888505777888638413222799998-----9989999969981889


Q ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHH---------
Q ss_conf             79999999730268999986878865589999999970996799832678875-32113388877555322---------
Q gi|254780321|r   92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPDRVKKQIEETIGIS---------  161 (606)
Q Consensus        92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e~v~~ei~~~~g~~---------  161 (606)
T Consensus        76 ~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~  155 (189)
T cd00881          76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf             99999998646856999987989987899999999976998799998971877562999999999998753210232110


Q ss_pred             -----HHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf             -----32100011100223200678776321000
Q gi|254780321|r  162 -----TEDALLVSAKTGEGIPLLLERIVQQLPSP  190 (606)
Q Consensus       162 -----~~~ii~vSAktG~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       156 ~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~p  189 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP  189 (189)
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             1258877599988867869799999999768799