HHsearch alignment for GI: 254780321 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=345.38 Aligned_cols=173 Identities=40% Similarity=0.616 Sum_probs=157.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444-311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~-----~~~~i~~iDTPGh~~f 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-----PDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEE-----CCEEEEEEECCCCHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998-----9989999969981889
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHH---------
Q ss_conf 79999999730268999986878865589999999970996799832678875-32113388877555322---------
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPDRVKKQIEETIGIS--------- 161 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e~v~~ei~~~~g~~--------- 161 (606)
T Consensus 76 ~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~ 155 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 99999998646856999987989987899999999976998799998971877562999999999998753210232110
Q ss_pred -----HHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -----32100011100223200678776321000
Q gi|254780321|r 162 -----TEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 162 -----~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 156 ~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 1258877599988867869799999999768799