HHsearch alignment for GI: 254780321 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.44 E-value=6.8e-12 Score=99.34 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 5 KivlvGd~~vGKTsli~r~~--~~~f~~~~~-~T----------ig~~~~~k~v-----~~~~~~i~l~iwDt~G~e~~~ 66 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFS--EDSFNPSFI-ST----------IGIDFKIRTI-----ELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CC----------CCEEEEEEEE-----EECCEEEEEEEEECCCCCCHH
T ss_conf 99999999978899999996--099999868-98----------6468899999-----999999999999899970011
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
T Consensus 67 ~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v-~~~e~~~~a~~~~~~~~e~ 145 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALADEYGIKFLET 145 (167)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCC-CHHHHHHHHHHHCCEEEEE
T ss_conf 667998565058899556898799999999999999866999705764212450230779-9999999999809969998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 146 SAktg~nI~e~F~~l~~~i 164 (167)
T cd01867 146 SAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 2257907899999999999