HHsearch alignment for GI: 254780321 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.44  E-value=6.8e-12  Score=99.34  Aligned_cols=156  Identities=23%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         5 KivlvGd~~vGKTsli~r~~--~~~f~~~~~-~T----------ig~~~~~k~v-----~~~~~~i~l~iwDt~G~e~~~   66 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFS--EDSFNPSFI-ST----------IGIDFKIRTI-----ELDGKKIKLQIWDTAGQERFR   66 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CC----------CCEEEEEEEE-----EECCEEEEEEEEECCCCCCHH
T ss_conf             99999999978899999996--099999868-98----------6468899999-----999999999999899970011


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV  168 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v  168 (606)
T Consensus        67 ~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v-~~~e~~~~a~~~~~~~~e~  145 (167)
T cd01867          67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALADEYGIKFLET  145 (167)
T ss_pred             HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCC-CHHHHHHHHHHHCCEEEEE
T ss_conf             667998565058899556898799999999999999866999705764212450230779-9999999999809969998


Q ss_pred             HHHCCCCCCHHHHHHHHHH
Q ss_conf             1100223200678776321
Q gi|254780321|r  169 SAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       169 SAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       146 SAktg~nI~e~F~~l~~~i  164 (167)
T cd01867         146 SAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             2257907899999999999