HHsearch alignment for GI: 254780321 and conserved domain: cd01874

>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.23  E-value=8.1e-10  Score=85.41  Aligned_cols=152  Identities=16%  Similarity=0.188  Sum_probs=97.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         3 Kvv~lGd~~VGKTsli~r~~--~~~f~~~y---------------~pti~~~-~~~~~-~~~~~~v~l~iwDTaG~e~~~   63 (175)
T cd01874           3 KCVVVGDGAVGKTCLLISYT--TNKFPSEY---------------VPTVFDN-YAVTV-MIGGEPYTLGLFDTAGQEDYD   63 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEE-EEEEE-EECCEEEEEEEEECCCCCCCH
T ss_conf             99998999958899999996--49899986---------------7863478-99999-999999999999899974512


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH----HHHH---HCCCCEEEEECCCCCCCCCC----------CCHH-HHH
Q ss_conf             9999999730268999986878865589999----9999---70996799832678875321----------1338-887
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLANV----YQAI---DNNHEIITVLNKADLPSADP----------DRVK-KQI  154 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~----~~A~---~~~l~~I~viNKiD~~~A~~----------e~v~-~ei  154 (606)
T Consensus        64 ~l~~~~~~~~~~~ilvydv~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg  140 (175)
T cd01874          64 RLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETG  140 (175)
T ss_pred             HHHHHHHHCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             465887713888899963798---78899999999999998298998899998720335666677764402656689999


Q ss_pred             HHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             7555-3223210001110022320067877632
Q gi|254780321|r  155 EETI-GISTEDALLVSAKTGEGIPLLLERIVQQ  186 (606)
Q Consensus       155 ~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~  186 (606)
T Consensus       141 ~~lA~~~~~~~y~EtSAk~g~nV~e~F~~~i~~  173 (175)
T cd01874         141 EKLARDLKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             999997599599991337895979999999998