HHsearch alignment for GI: 254780321 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=346.98 Aligned_cols=174 Identities=27% Similarity=0.411 Sum_probs=147.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 1799980138987788999999829805444-431130586779871950523279999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~-----~~~~~~~~~IDtPGH~d 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY-----ETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEE-----ECCCEEEEECCCCCHHH
T ss_conf 7999996058869899999999886634444112001005466650588614418999-----60881699626896077
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC--CCCHHHHHHHHH---HHHHHH
Q ss_conf 279999999730268999986878865589999999970996-79983267887532--113388877555---322321
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD--PDRVKKQIEETI---GISTED 164 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~--~e~v~~ei~~~~---g~~~~~ 164 (606)
T Consensus 78 F~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~ 157 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88899863511362689985277874789999999998099962799968778987899999999999999842999556
Q ss_pred --HHHHHHHCCC----------CCCHHHHHHHHHHHCC
Q ss_conf --0001110022----------3200678776321000
Q gi|254780321|r 165 --ALLVSAKTGE----------GIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 --ii~vSAktG~----------GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 158 ~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 158 TPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred CEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 82999773875357888755369999999999648998