HHsearch alignment for GI: 254780321 and conserved domain: cd01893

>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43  E-value=1.2e-11  Score=97.66  Aligned_cols=157  Identities=17%  Similarity=0.185  Sum_probs=101.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         3 iv~vGd~~VGKTsli~r~~--~~~F~~~~--~~t~~--------~~~~-----~~~---~~~~~v~l~i~DtaG~e~~~~   62 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLV--SEEFPENV--PRVLP--------EITI-----PAD---VTPERVPTTIVDTSSRPQDRA   62 (166)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCC--CCCCC--------CEEE-----EEE---ECCEEEEEEEEECCCCCCCCH
T ss_conf             9999999989999999998--49788877--76345--------6899-----999---889099999998998723024


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCHHHHH-HHHH-HHH-HHHHH
Q ss_conf             99999973026899998687886558999999----99709967998326788753211338887-7555-322-32100
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ----AIDNNHEIITVLNKADLPSADPDRVKKQI-EETI-GIS-TEDAL  166 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~----A~~~~l~~I~viNKiD~~~A~~e~v~~ei-~~~~-g~~-~~~ii  166 (606)
T Consensus        63 ~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~  142 (166)
T cd01893          63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV  142 (166)
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             57987368988999970898778999999999999986899968999988654002503358899999999730748899


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf             011100223200678776321000
Q gi|254780321|r  167 LVSAKTGEGIPLLLERIVQQLPSP  190 (606)
Q Consensus       167 ~vSAktG~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       143 EtSAktg~nV~e~F~~~~k~~l~p  166 (166)
T cd01893         143 ECSAKTLINVSEVFYYAQKAVLHP  166 (166)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHCC
T ss_conf             906588919899999999998098