HHsearch alignment for GI: 254780321 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=8.7e-18 Score=138.88 Aligned_cols=149 Identities=26% Similarity=0.295 Sum_probs=106.1
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH--
Q ss_conf 998013898778899999982980544443113058677987195052327999974378843899996178730027--
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT-- 92 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~-- 92 (606)
T Consensus 1 aivG~pN~GKSsL~N~l~---~~--~~~i---vs~------~~gtTr~~~~~~~~-----~~~~~~~lvDTpG~~~~~~~ 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT---GR--RDAI---VED------TPGVTRDRIYGEAE-----WGGREFILIDTGGIEPDDEG 61 (157)
T ss_pred CCCCCCCCCHHHHHHHHH---CC--CCEE---EEC------CCCCEEEEEEEEEE-----ECCEEEEEEECCCCCCCCCH
T ss_conf 904899988999999995---88--7535---407------99935667899999-----99988999857875556606
Q ss_pred --HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --99----999997302689999868788655899999999709967998326788753211338887755532232100
Q gi|254780321|r 93 --YE----VSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 --~E----V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
T Consensus 62 ~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~--~~~~~~~~~~-l~--~~~~i 136 (157)
T cd01894 62 ISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK--EEDEAAEFYS-LG--FGEPI 136 (157)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC--CHHHHHHHHH-CC--CCCEE
T ss_conf 7899999999999865907999989999998999999999984798099997871658--6456999996-59--99759
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 137 ~iSA~~g~Gid~L~~~I~~~L 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEECCCCHHHHHHHHHHHC
T ss_conf 999658949999999999659