HHsearch alignment for GI: 254780321 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.41 E-value=3e-11 Score=94.96 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=101.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~-~----------Tig~~~~~k~~~~----~~~~~i~l~iwDtaG~e~~~~ 67 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-M----------TTGCDFVVKEVPV----DTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-C----------CCCEEEEEEEEEE----CCCCEEEEEEEECCCCCCHHH
T ss_conf 999995995889999999978886688888-8----------6457889999997----899799999997999840067
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997---0996799832678875321133-8887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRV-KKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii~vS 169 (606)
T Consensus 68 l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~~~a~~~~~~~~E~S 145 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHHHCCCEEEEEC
T ss_conf 89999764268999970774668999999999999766898689998722445245--5699999999998899899986
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 146 Ak~g~nV~e~F~~lar~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 688909899999999986