HHsearch alignment for GI: 254780321 and conserved domain: cd04115

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.23  E-value=9.2e-10  Score=85.01  Aligned_cols=158  Identities=21%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf             31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r   11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD   90 (606)
Q Consensus        11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D   90 (606)
T Consensus         2 ~~Kiv~lGd~~VGKTsli~r~~--~~~F~~~~-~~Ti----------g~d~~~k~i~-----v~~~~v~l~iwDtaG~e~   63 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFC--AGRFPERT-EATI----------GVDFRERTVE-----IDGERIKVQLWDTAGQER   63 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCE----------EEEEEEEEEE-----ECCEEEEEEEEECCCCHH
T ss_conf             6999999979977999999995--39889987-8863----------0787899999-----999999999997788530


Q ss_pred             HH-HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             27-9999999730268999986878865589999999-97----099679983267887532113388877555322321
Q gi|254780321|r   91 FT-YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTED  164 (606)
Q Consensus        91 F~-~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~  164 (606)
T Consensus        64 ~~~s~~~~~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~-Vs~~e~~~~a~~~~~~  142 (170)
T cd04115          64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-VPTDLAQRFADAHSMP  142 (170)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCC-CCHHHHHHHHHHCCCE
T ss_conf             567778998457735799950474767999999999999865888997999999821341178-7999999999977999


Q ss_pred             HHHHHHH---CCCCCCHHHHHHHHHH
Q ss_conf             0001110---0223200678776321
Q gi|254780321|r  165 ALLVSAK---TGEGIPLLLERIVQQL  187 (606)
Q Consensus       165 ii~vSAk---tG~GV~~LLd~Iv~~i  187 (606)
T Consensus       143 ~~E~SAK~~~~~~nV~~~F~~la~~i  168 (170)
T cd04115         143 LFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99988899851708899999999996