HHsearch alignment for GI: 254780321 and conserved domain: cd04117

>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36  E-value=2.7e-11  Score=95.30  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         3 IvllGd~~VGKTsli~r~~--~~~f~~~~~-~Ti----------g~~~~~k~v-----~~~~~~i~l~iwDtaGqe~~~~   64 (161)
T cd04117           3 LLLIGDSGVGKTCLLCRFT--DNEFHSSHI-STI----------GVDFKMKTI-----EVDGIKVRIQIWDTAGQERYQT   64 (161)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCCCCC-CCC----------EEEEEEEEE-----EECCEEEEEEEEECCCCCCCCC
T ss_conf             9999949985899999994--299899878-872----------089889999-----9999999999997999602363


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997302689999868788655899999999-7---09967998326788753211338887755532232100011
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS  169 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS  169 (606)
T Consensus        65 ~~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~-v~~~~~~~~a~~~~~~~~etS  143 (161)
T cd04117          65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-VGDEQGNKLAKEYGMDFFETS  143 (161)
T ss_pred             CHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCEEEEEC
T ss_conf             5588876416889961489889999999999999987899864999873278786277-999999999998699799967


Q ss_pred             HHCCCCCCHHHHHHHHHH
Q ss_conf             100223200678776321
Q gi|254780321|r  170 AKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       170 AktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       144 Ak~~~nV~e~F~~l~~~i  161 (161)
T cd04117         144 ACTNSNIKESFTRLTELV  161 (161)
T ss_pred             CCCCCCHHHHHHHHHHHC
T ss_conf             789829899999999649