HHsearch alignment for GI: 254780321 and conserved domain: cd04117
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36 E-value=2.7e-11 Score=95.30 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=101.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 IvllGd~~VGKTsli~r~~--~~~f~~~~~-~Ti----------g~~~~~k~v-----~~~~~~i~l~iwDtaGqe~~~~ 64 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFT--DNEFHSSHI-STI----------GVDFKMKTI-----EVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCC-CCC----------EEEEEEEEE-----EECCEEEEEEEEECCCCCCCCC
T ss_conf 9999949985899999994--299899878-872----------089889999-----9999999999997999602363
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-7---09967998326788753211338887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
T Consensus 65 ~~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~-v~~~~~~~~a~~~~~~~~etS 143 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-VGDEQGNKLAKEYGMDFFETS 143 (161)
T ss_pred CHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCEEEEEC
T ss_conf 5588876416889961489889999999999999987899864999873278786277-999999999998699799967
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 144 Ak~~~nV~e~F~~l~~~i 161 (161)
T cd04117 144 ACTNSNIKESFTRLTELV 161 (161)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 789829899999999649