HHsearch alignment for GI: 254780321 and conserved domain: cd04118

>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32  E-value=9.1e-11  Score=91.77  Aligned_cols=156  Identities=17%  Similarity=0.246  Sum_probs=99.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         3 ivlvGd~~VGKTsLi~r~~~--~~f~~~~y--------------~~tig~~~~~k~i-~v~~~~v~l~iwDtaG~e~~~~   65 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVH--HRFLVGPY--------------QNTIGAAFVAKRM-VVGERVVTLGIWDTAGSERYEA   65 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCCCCC--------------CCCCEEEEEEEEE-EECCEEEEEEEEECCCCHHHHH
T ss_conf             99999699879999999985--97998997--------------8763058899999-9999999999991999731235


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHHHHHHH
Q ss_conf             999999730268999986878865589---9999999---70996799832678875321--133-88877555322321
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTL---ANVYQAI---DNNHEIITVLNKADLPSADP--DRV-KKQIEETIGISTED  164 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~---~~~~~A~---~~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g~~~~~  164 (606)
T Consensus        66 l~~~y~~~a~~~ilvydit~---~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~  142 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTD---SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ  142 (193)
T ss_pred             HHHHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             57988347744578830698---799998999999999748999979997746632201666446899999999980996


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf             0001110022320067877632100
Q gi|254780321|r  165 ALLVSAKTGEGIPLLLERIVQQLPS  189 (606)
Q Consensus       165 ii~vSAktG~GV~~LLd~Iv~~iP~  189 (606)
T Consensus       143 ~~E~SAktg~nV~e~F~~la~~i~~  167 (193)
T cd04118         143 HFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             9998389893989999999999997