HHsearch alignment for GI: 254780321 and conserved domain: cd04118
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32 E-value=9.1e-11 Score=91.77 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=99.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 ivlvGd~~VGKTsLi~r~~~--~~f~~~~y--------------~~tig~~~~~k~i-~v~~~~v~l~iwDtaG~e~~~~ 65 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH--HRFLVGPY--------------QNTIGAAFVAKRM-VVGERVVTLGIWDTAGSERYEA 65 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC--------------CCCCEEEEEEEEE-EECCEEEEEEEEECCCCHHHHH
T ss_conf 99999699879999999985--97998997--------------8763058899999-9999999999991999731235
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHHHHHHH
Q ss_conf 999999730268999986878865589---9999999---70996799832678875321--133-88877555322321
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL---ANVYQAI---DNNHEIITVLNKADLPSADP--DRV-KKQIEETIGISTED 164 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~---~~~~~A~---~~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g~~~~~ 164 (606)
T Consensus 66 l~~~y~~~a~~~ilvydit~---~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~ 142 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTD---SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ 142 (193)
T ss_pred HHHHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 57988347744578830698---799998999999999748999979997746632201666446899999999980996
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 143 ~~E~SAktg~nV~e~F~~la~~i~~ 167 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9998389893989999999999997