HHsearch alignment for GI: 254780321 and conserved domain: cd04120
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.39 E-value=1.7e-11 Score=96.66 Aligned_cols=155 Identities=25% Similarity=0.296 Sum_probs=103.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 IvllGd~gVGKTsLi~rf~--~~~F~~~y~-~T----------ig~d~~~k~i~-----~~~~~v~l~IWDTaGqe~f~s 64 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFT--DDTFCEACK-SG----------VGVDFKIKTVE-----LRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCC-CC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999979972999999995--499999879-97----------64688999999-----999999999997988612452
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHH
Q ss_conf 99999973026899998687886558999999997----0996799832678875321133888775553-223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~~ii~v 168 (606)
T Consensus 65 l~~~yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R-~Vs~~e~~~~A~~~~~~~f~Et 143 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EISRQQGEKFAQQITGMRFCEA 143 (202)
T ss_pred CHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHC-CCCHHHHHHHHHHCCCCEEEEC
T ss_conf 357887641445899856888999999999999997466887189876536505317-8799999999982799889992
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 144 SAkt~~nV~e~F~~l~~~i 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 5899969899999999999