HHsearch alignment for GI: 254780321 and conserved domain: cd04122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.32 E-value=3.6e-11 Score=94.46 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 4 KivlvGd~~VGKTsli~r~~--~~~f~~~~-~~T----------ig~~~~~k~i~-----~~~~~~~l~iwDtaG~e~~~ 65 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFT--EKKFMADC-PHT----------IGVEFGTRIIE-----VNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCC
T ss_conf 99999999957999999991--29889999-997----------44688999999-----99999999999899985444
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999-99970---996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVY-QAIDN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~-~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
T Consensus 66 ~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~-V~~~e~~~~a~~~~~~~~E~ 144 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD-VTYEEAKQFADENGLLFLEC 144 (166)
T ss_pred CCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 25211143154659972587476799999999999985699975870340157444389-99999999999869989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 145 SAk~g~nV~e~F~~l~~~i 163 (166)
T cd04122 145 SAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6587808899999999999