HHsearch alignment for GI: 254780321 and conserved domain: cd04126
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.32 E-value=3.8e-11 Score=94.27 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=96.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 ivllGd~~VGKTsl~~rf~--~~~F~~~----------------~~Ti-----g~~~~~k~~~~~~l~IwDTaGqE~f~s 59 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYM--ERRFKDT----------------VSTV-----GGAFYLKQWGPYNISIWDTAGREQFHG 59 (220)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCC----------------CCCC-----CEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf 9999999988999999997--2989998----------------8871-----368999876478899994798622433
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHHH----CCCCEEEEECCCCCCCCC-----------------CCC
Q ss_conf 9999997302689999868788655899---9999997----099679983267887532-----------------113
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQAID----NNHEIITVLNKADLPSAD-----------------PDR 149 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A~~----~~l~~I~viNKiD~~~A~-----------------~e~ 149 (606)
T Consensus 60 l~~~y~r~a~~~ilvyDit~---~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~ 136 (220)
T cd04126 60 LGSMYCRGAAAVILTYDVSN---VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQ 136 (220)
T ss_pred CHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 26888567988999997989---899999999999999847999808999887121364344333333322344100354
Q ss_pred H-HHHHHHH-------HHHHHH-------HHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 3-8887755-------532232-------1000111002232006787763210
Q gi|254780321|r 150 V-KKQIEET-------IGISTE-------DALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 150 v-~~ei~~~-------~g~~~~-------~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
T Consensus 137 Vs~ee~~~~a~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~ 190 (220)
T cd04126 137 VTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 489999999998502202221111245776999147899798999999999999