HHsearch alignment for GI: 254780321 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.10 E-value=2.3e-09 Score=82.33 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=97.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 17999801389877889999998298054444311305867798719505232-79999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
T Consensus 2 ~KivllGd~~VGKTsLi~r~~--~~~f~~~y-~--------------pTi~~~~~~~i---~v~~~~v~l~iwDTaG~e~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT--LGEFPEEY-H--------------PTVFENYVTDC---RVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCC
T ss_conf 199999989976899999998--29899987-8--------------86678989999---9999999999997888703
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHH-HHH--CCCCEEEEECCCCCCCCCC-------CC-HH-H--
Q ss_conf 27999999973026899998687886558999----999-997--0996799832678875321-------13-38-8--
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQ-AID--NNHEIITVLNKADLPSADP-------DR-VK-K-- 152 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~-A~~--~~l~~I~viNKiD~~~A~~-------e~-v~-~-- 152 (606)
T Consensus 62 ~~~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g 138 (187)
T cd04129 62 YERLRPLSYSKAHVILIGFAVDT---PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG 138 (187)
T ss_pred CCCCCCCEECCCCEEEEECCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHH
T ss_conf 45460412338858999702698---667999999999999985879988999886001134112111223155789999
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -87755532232100011100223200678776321000
Q gi|254780321|r 153 -QIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 153 -ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 139 ~~~a~~~~--~~~y~EtSAk~~~nV~e~F~~~~r~~l~~ 175 (187)
T cd04129 139 KRVAKEIG--AKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred HHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999849--97899968899979899999999999752