HHsearch alignment for GI: 254780321 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37 E-value=2.3e-11 Score=95.74 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~F~~~~---------------~pTi~~~-~~~~~~~~~~~~v~l~iwDtaG~e~~~~ 64 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYS--QGKFPEEY---------------VPTVFEN-YVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEE-EEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 9999949976999999996--39899975---------------8966479-9999995499899999996999711053
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHH-HHHHHH
Q ss_conf 9999997302689999868788655899-9999997---0996799832678875321--133-888775553-223210
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADP--DRV-KKQIEETIG-ISTEDA 165 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g-~~~~~i 165 (606)
T Consensus 65 l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y 144 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY 144 (187)
T ss_pred CHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 43445300348889503687677999999999999986899997999987221221223765789999999998599789
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 0011100223200678776321000
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 145 ~EtSAk~g~nV~e~F~~l~~~il~~ 169 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9957688929899999999999854