HHsearch alignment for GI: 254780321 and conserved domain: cd04132

>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37  E-value=2.3e-11  Score=95.74  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         3 ivlvGd~~VGKTsli~r~~--~~~F~~~~---------------~pTi~~~-~~~~~~~~~~~~v~l~iwDtaG~e~~~~   64 (187)
T cd04132           3 IVVVGDGGCGKTCLLIVYS--QGKFPEEY---------------VPTVFEN-YVTNIQGPNGKIIELALWDTAGQEEYDR   64 (187)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEE-EEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf             9999949976999999996--39899975---------------8966479-9999995499899999996999711053


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHH-HHHHHH
Q ss_conf             9999997302689999868788655899-9999997---0996799832678875321--133-888775553-223210
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADP--DRV-KKQIEETIG-ISTEDA  165 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g-~~~~~i  165 (606)
T Consensus        65 l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y  144 (187)
T cd04132          65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY  144 (187)
T ss_pred             CHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             43445300348889503687677999999999999986899997999987221221223765789999999998599789


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf             0011100223200678776321000
Q gi|254780321|r  166 LLVSAKTGEGIPLLLERIVQQLPSP  190 (606)
Q Consensus       166 i~vSAktG~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       145 ~EtSAk~g~nV~e~F~~l~~~il~~  169 (187)
T cd04132         145 LECSAKTMENVEEVFDTAIEEALKK  169 (187)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9957688929899999999999854