HHsearch alignment for GI: 254780321 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.24 E-value=4.8e-10 Score=86.93 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=97.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 999801389877889999998298054444311305867798719505232-7999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 4 ivllGd~~VGKTsL~~rf~--~~~F~~~~~---------------pTi~~~~~~~i---~v~~~~~~l~iwDTaG~e~~~ 63 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYT--SNKFPTDYI---------------PTVFDNFSANV---SVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCC---------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf 9998999977999999996--598999867---------------85358999999---999989999999799976542
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHH---HCCCCEEEEECCCCCCCCCCC--------CH-HHHHHH
Q ss_conf 99999997302689999868788655899----999999---709967998326788753211--------33-888775
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAI---DNNHEIITVLNKADLPSADPD--------RV-KKQIEE 156 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~---~~~l~~I~viNKiD~~~A~~e--------~v-~~ei~~ 156 (606)
T Consensus 64 ~l~~~~y~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~ 140 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLIS---RASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE 140 (176)
T ss_pred HHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHH
T ss_conf 468987267875799997898---78999999999999998684998899998632021222333302467777999999
Q ss_pred HH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 55-3223210001110022320067877632100
Q gi|254780321|r 157 TI-GISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 157 ~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 141 ~a~~~~~~~y~EtSAk~~~nV~e~F~~~~~~il~ 174 (176)
T cd04133 141 LRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9997799789994789880989999999999808