HHsearch alignment for GI: 254780321 and conserved domain: cd04133

>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.24  E-value=4.8e-10  Score=86.93  Aligned_cols=153  Identities=18%  Similarity=0.182  Sum_probs=97.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             999801389877889999998298054444311305867798719505232-7999974378843899996178730027
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         4 ivllGd~~VGKTsL~~rf~--~~~F~~~~~---------------pTi~~~~~~~i---~v~~~~~~l~iwDTaG~e~~~   63 (176)
T cd04133           4 CVTVGDGAVGKTCMLICYT--SNKFPTDYI---------------PTVFDNFSANV---SVDGNTVNLGLWDTAGQEDYN   63 (176)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCCC---------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf             9998999977999999996--598999867---------------85358999999---999989999999799976542


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHH---HCCCCEEEEECCCCCCCCCCC--------CH-HHHHHH
Q ss_conf             99999997302689999868788655899----999999---709967998326788753211--------33-888775
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAI---DNNHEIITVLNKADLPSADPD--------RV-KKQIEE  156 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~---~~~l~~I~viNKiD~~~A~~e--------~v-~~ei~~  156 (606)
T Consensus        64 ~l~~~~y~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~  140 (176)
T cd04133          64 RLRPLSYRGADVFVLAFSLIS---RASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE  140 (176)
T ss_pred             HHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHH
T ss_conf             468987267875799997898---78999999999999998684998899998632021222333302467777999999


Q ss_pred             HH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf             55-3223210001110022320067877632100
Q gi|254780321|r  157 TI-GISTEDALLVSAKTGEGIPLLLERIVQQLPS  189 (606)
Q Consensus       157 ~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~  189 (606)
T Consensus       141 ~a~~~~~~~y~EtSAk~~~nV~e~F~~~~~~il~  174 (176)
T cd04133         141 LRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             9997799789994789880989999999999808