HHsearch alignment for GI: 254780321 and conserved domain: cd04144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.37 E-value=3.2e-11 Score=94.85 Aligned_cols=154 Identities=20% Similarity=0.198 Sum_probs=100.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 ivviGd~gVGKTsli~r~~--~~~F~~~y---------------~pTi~~~-~~k~~-~~~~~~~~l~iwDtaG~e~~~~ 62 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLC--LNHFVETY---------------DPTIEDS-YRKQV-VVDGQPCMLEVLDTAGQEEYTA 62 (190)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCCCEE-EEEEE-EECCEEEEEEEEECCCCCCHHH
T ss_conf 8999989987899999996--29799886---------------9972478-89999-9999999999998999731167
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999----7---09967998326788753211338887755532232100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
T Consensus 63 l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~-V~~~e~~~~a~~~~~~~~ 141 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-VSTEEGAALARRLGCEFI 141 (190)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 8899823676589997279778999999999999998533799952895145535033057-899999999998099899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 142 E~SAk~~~nV~e~F~~l~~~i 162 (190)
T cd04144 142 EASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 973588809799999999999