HHsearch alignment for GI: 254780321 and conserved domain: cd04144

>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.37  E-value=3.2e-11  Score=94.85  Aligned_cols=154  Identities=20%  Similarity=0.198  Sum_probs=100.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         2 ivviGd~gVGKTsli~r~~--~~~F~~~y---------------~pTi~~~-~~k~~-~~~~~~~~l~iwDtaG~e~~~~   62 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLC--LNHFVETY---------------DPTIEDS-YRKQV-VVDGQPCMLEVLDTAGQEEYTA   62 (190)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCCCEE-EEEEE-EECCEEEEEEEEECCCCCCHHH
T ss_conf             8999989987899999996--29799886---------------9972478-89999-9999999999998999731167


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999997302689999868788655899999999----7---09967998326788753211338887755532232100
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL  166 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii  166 (606)
T Consensus        63 l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~-V~~~e~~~~a~~~~~~~~  141 (190)
T cd04144          63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-VSTEEGAALARRLGCEFI  141 (190)
T ss_pred             HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCC-CCHHHHHHHHHHCCCEEE
T ss_conf             8899823676589997279778999999999999998533799952895145535033057-899999999998099899


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH
Q ss_conf             011100223200678776321
Q gi|254780321|r  167 LVSAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       167 ~vSAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       142 E~SAk~~~nV~e~F~~l~~~i  162 (190)
T cd04144         142 EASAKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             EECCCCCCCHHHHHHHHHHHH
T ss_conf             973588809799999999999