HHsearch alignment for GI: 254780321 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.17 E-value=1.8e-09 Score=83.02 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 2 KVvllGd~gVGKTSLi~rf~--~~~f~~~~y~~t----------~~~d~~~k~v~-----vd~~~~~l~i~Dt~g~e~~~ 64 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDHAYDAS----------GDDDTYERTVS-----VDGEESTLVVIDHWEQEMWT 64 (221)
T ss_pred EEEEECCCCCHHHHHHHHHH--HCCCCCCCCCCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCHHHH
T ss_conf 79999989970999999998--198698667874----------42488999999-----99999899999898731266
Q ss_pred HHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCH-HHHHHH---HHHHHH
Q ss_conf 9999999-73026899998687886558999999997-----0996799832678875321133-888775---553223
Q gi|254780321|r 93 YEVSRSL-SACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDRV-KKQIEE---TIGIST 162 (606)
Q Consensus 93 ~EV~r~l-~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~v-~~ei~~---~~g~~~ 162 (606)
T Consensus 65 ~~--~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R--~Vs~eEg~~~A~~~~~-- 138 (221)
T cd04148 65 ED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSVQEGRACAVVFDC-- 138 (221)
T ss_pred HH--HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHHHHHHHHHHCCC--
T ss_conf 66--56530686899999646677888899999999986489995199985356668638--9999999999998599--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 21000111002232006787763210
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
T Consensus 139 -~F~EtSAk~~~NV~elF~~lvrqIr 163 (221)
T cd04148 139 -KFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred -EEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -8999457999498999999999998