HHsearch alignment for GI: 254780321 and conserved domain: cd04148

>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.17  E-value=1.8e-09  Score=83.02  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=95.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         2 KVvllGd~gVGKTSLi~rf~--~~~f~~~~y~~t----------~~~d~~~k~v~-----vd~~~~~l~i~Dt~g~e~~~   64 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFT--SGEYDDHAYDAS----------GDDDTYERTVS-----VDGEESTLVVIDHWEQEMWT   64 (221)
T ss_pred             EEEEECCCCCHHHHHHHHHH--HCCCCCCCCCCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCHHHH
T ss_conf             79999989970999999998--198698667874----------42488999999-----99999899999898731266


Q ss_pred             HHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCH-HHHHHH---HHHHHH
Q ss_conf             9999999-73026899998687886558999999997-----0996799832678875321133-888775---553223
Q gi|254780321|r   93 YEVSRSL-SACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDRV-KKQIEE---TIGIST  162 (606)
Q Consensus        93 ~EV~r~l-~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~v-~~ei~~---~~g~~~  162 (606)
T Consensus        65 ~~--~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R--~Vs~eEg~~~A~~~~~--  138 (221)
T cd04148          65 ED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSVQEGRACAVVFDC--  138 (221)
T ss_pred             HH--HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHHHHHHHHHHCCC--
T ss_conf             66--56530686899999646677888899999999986489995199985356668638--9999999999998599--


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             21000111002232006787763210
Q gi|254780321|r  163 EDALLVSAKTGEGIPLLLERIVQQLP  188 (606)
Q Consensus       163 ~~ii~vSAktG~GV~~LLd~Iv~~iP  188 (606)
T Consensus       139 -~F~EtSAk~~~NV~elF~~lvrqIr  163 (221)
T cd04148         139 -KFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             -EEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             -8999457999498999999999998