HHsearch alignment for GI: 254780321 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.52  E-value=3.5e-13  Score=107.94  Aligned_cols=150  Identities=23%  Similarity=0.332  Sum_probs=102.2

Q ss_pred             HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf             53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r   10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV   89 (606)
Q Consensus        10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~   89 (606)
T Consensus        14 k~~KililG~~~sGKTsil~~l~--~~~~~~~----------------~pT~G~~~~~i~~-----~~~~~~iwD~~G~e   70 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFL--LGEVVHT----------------SPTIGSNVEEIVY-----KNIRFLMWDIGGQE   70 (174)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCC
T ss_conf             77999999899998899999997--3992771----------------6723604699997-----88899999899986


Q ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf             027999999973026899998687886-558999999997----0996799832678875321133888775553223--
Q gi|254780321|r   90 DFTYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST--  162 (606)
Q Consensus        90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~--  162 (606)
T Consensus        71 ~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~l~~~~  147 (174)
T cd04153          71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIR  147 (174)
T ss_pred             CCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHH
T ss_conf             566226777057753799997678889999999999997261016982899995555655789---99999997477763


Q ss_pred             ---HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             ---21000111002232006787763
Q gi|254780321|r  163 ---EDALLVSAKTGEGIPLLLERIVQ  185 (606)
Q Consensus       163 ---~~ii~vSAktG~GV~~LLd~Iv~  185 (606)
T Consensus       148 ~~~~~~~~~SAktG~Gv~e~f~wLa~  173 (174)
T cd04153         148 DHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             59809999668589198999999866