HHsearch alignment for GI: 254780321 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.52 E-value=3.5e-13 Score=107.94 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=102.2
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
T Consensus 14 k~~KililG~~~sGKTsil~~l~--~~~~~~~----------------~pT~G~~~~~i~~-----~~~~~~iwD~~G~e 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL--LGEVVHT----------------SPTIGSNVEEIVY-----KNIRFLMWDIGGQE 70 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCC
T ss_conf 77999999899998899999997--3992771----------------6723604699997-----88899999899986
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 027999999973026899998687886-558999999997----0996799832678875321133888775553223--
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST-- 162 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-- 162 (606)
T Consensus 71 ~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~l~~~~ 147 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIR 147 (174)
T ss_pred CCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHH
T ss_conf 566226777057753799997678889999999999997261016982899995555655789---99999997477763
Q ss_pred ---HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ---21000111002232006787763
Q gi|254780321|r 163 ---EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ---~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 148 ~~~~~~~~~SAktG~Gv~e~f~wLa~ 173 (174)
T cd04153 148 DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 59809999668589198999999866