HHsearch alignment for GI: 254780321 and conserved domain: cd04155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=1.4e-15 Score=124.03 Aligned_cols=151 Identities=19% Similarity=0.294 Sum_probs=104.7
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~--~~~~~~~------------~pT~g~~~----~~v~-----~~~~~~~lwD~~G~ 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA--SEDISHI------------TPTQGFNI----KTVQ-----SDGFKLNVWDIGGQ 68 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH--CCCCCCC------------CCCCCEEE----EEEE-----ECCEEEEEEECCCC
T ss_conf 877589999799998899999985--6998660------------68113237----9999-----89999999855875
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 0027999999973026899998687886-55899999999----70996799832678875321133888775553223-
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST- 162 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~- 162 (606)
T Consensus 69 ~~~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~---~~eI~~~l~l~~~ 145 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALNLHDL 145 (173)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---HHHHHHHHCHHHC
T ss_conf 1012689976555637999996675688999999999997413006983899997666777899---9999998587643
Q ss_pred ----HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ----21000111002232006787763
Q gi|254780321|r 163 ----EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ----~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 146 ~~~~~~i~~~SA~tG~Gi~E~f~WL~~ 172 (173)
T cd04155 146 RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 488758999578579398999999854