HHsearch alignment for GI: 254780321 and conserved domain: cd04156

>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.48  E-value=2.2e-12  Score=102.61  Aligned_cols=147  Identities=20%  Similarity=0.249  Sum_probs=98.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         2 ivilG~~~~GKTsil~r~~--~~~~~~~----------------~pTig~~~~~~~~---~-~~~~l~iwD~~G~e~~~~   59 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLK--HAELVTT----------------IPTVGFNVEMLQL---E-KHLSLTVWDVGGQEKMRT   59 (160)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCEEEEEEEE---C-CEEEEEEEECCCCCCCCH
T ss_conf             9999999999999999995--6987775----------------7761503899998---9-989999997898624741


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------H
Q ss_conf             999999730268999986878865-58999999997----099679983267887532113388877555322------3
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS------T  162 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------~  162 (606)
T Consensus        60 ~~~~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~~~~~~~~~~  136 (160)
T cd04156          60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRD  136 (160)
T ss_pred             HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHCCC
T ss_conf             58877456778999985686788787999999998663537874999998633656679---999999986999985399


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             21000111002232006787763
Q gi|254780321|r  163 EDALLVSAKTGEGIPLLLERIVQ  185 (606)
Q Consensus       163 ~~ii~vSAktG~GV~~LLd~Iv~  185 (606)
T Consensus       137 ~~i~~~SAktGegi~e~f~~la~  159 (160)
T cd04156         137 WYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHC
T ss_conf             99998668849599999999857