HHsearch alignment for GI: 254780321 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.48 E-value=2.2e-12 Score=102.61 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~~----------------~pTig~~~~~~~~---~-~~~~l~iwD~~G~e~~~~ 59 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVTT----------------IPTVGFNVEMLQL---E-KHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCEEEEEEEE---C-CEEEEEEEECCCCCCCCH
T ss_conf 9999999999999999995--6987775----------------7761503899998---9-989999997898624741
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------H
Q ss_conf 999999730268999986878865-58999999997----099679983267887532113388877555322------3
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS------T 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------~ 162 (606)
T Consensus 60 ~~~~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~~~~~~~~~~ 136 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRD 136 (160)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHCCC
T ss_conf 58877456778999985686788787999999998663537874999998633656679---999999986999985399
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 21000111002232006787763
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 137 ~~i~~~SAktGegi~e~f~~la~ 159 (160)
T cd04156 137 WYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 99998668849599999999857