HHsearch alignment for GI: 254780321 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.21 E-value=2.5e-10 Score=88.79 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 IlilGLd~aGKTTil~~l~--~~~~~~-~~--------------~PT~Gf~~~~i~~-----~~~~l~~wDlgGq~~~R~ 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS--SERSLE-SV--------------VPTTGFNSVAIPT-----QDAIMELLEIGGSQNLRK 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC-CC--------------CCCCCCCEEEEEE-----CCEEEEEEECCCHHHHHH
T ss_conf 9999679998999999981--699876-53--------------5632774699998-----999999985375288865
Q ss_pred HHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-----HH
Q ss_conf 9999997302689999868788-655899999999--709967998326788753211338887755532232-----10
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAI--DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE-----DA 165 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~-----~i 165 (606)
T Consensus 60 ~W~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~---s~~ei~~~L~L~~i~~~r~w~ 136 (164)
T cd04162 60 YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELEPIARGRRWI 136 (164)
T ss_pred HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CHHHHHHHCCCCCCCCCCCEE
T ss_conf 69987117758999995688889999999999997087998699998632433699---999999866994637999889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 00111002232006787763210
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP 188 (606)
T Consensus 137 iq~~s~~g~gl~~~~~~l~~~~~ 159 (164)
T cd04162 137 LQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 97110479985899999999999