HHsearch alignment for GI: 254780321 and conserved domain: cd04168
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=0 Score=365.72 Aligned_cols=172 Identities=37% Similarity=0.541 Sum_probs=156.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 799980138987788999999829805444---43113058677987195052327999974378843899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~-----~~~~~n~iDtPG~~ 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-----EDTKVNLIDTPGHM 75 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEE-----CCEEEEEEECCCCH
T ss_conf 9899938998999999999996571222663306830378549989848703105899998-----99879998898846
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH--------
Q ss_conf 027999999973026899998687886558999999997099679983267887532113388877555322--------
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIS-------- 161 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~-------- 161 (606)
T Consensus 76 dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~ 155 (237)
T cd04168 76 DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 56668988976348169999658882234499999999859985998624457899999999999999789747677775
Q ss_pred -------------------------------------HHH----------------HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf -------------------------------------321----------------000111002232006787763210
Q gi|254780321|r 162 -------------------------------------TED----------------ALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 162 -------------------------------------~~~----------------ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
T Consensus 156 ~~~~~~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~P 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 55664445441088999876469999998857898678899999999997492988996789989599999999998778
Q ss_pred C
Q ss_conf 0
Q gi|254780321|r 189 S 189 (606)
Q Consensus 189 ~ 189 (606)
T Consensus 236 S 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
T ss_conf 9