HHsearch alignment for GI: 254780321 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.86 E-value=1.7e-07 Score=69.75 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=94.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 7 KivlvGd~~VGKTsLi~r~~--~~~F~~~y-~p--------------Ti~~~~~~~~~---i~~~~v~l~iwDTaGqe~f 66 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFA--KDCFPENY-VP--------------TVFENYTASFE---IDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CC--------------EEEEEEEEEEE---ECCEEEEEEEEECCCCHHC
T ss_conf 99999999989999999998--39999986-87--------------35322689999---9999999999968986201
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEECCCCCCCCCCCC----------HH-HHHHH
Q ss_conf 79999999730268999986878865589-99999997---099679983267887532113----------38-88775
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAID---NNHEIITVLNKADLPSADPDR----------VK-KQIEE 156 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~~---~~l~~I~viNKiD~~~A~~e~----------v~-~ei~~ 156 (606)
T Consensus 67 ~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred CCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 22125551278789999648977889999999999999868799889996171012441456677645677869999999
Q ss_pred HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf 55-3223210001110022-32006787763
Q gi|254780321|r 157 TI-GISTEDALLVSAKTGE-GIPLLLERIVQ 185 (606)
Q Consensus 157 ~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~ 185 (606)
T Consensus 147 ~A~~~g~~~y~EtSAk~~~n~V~e~F~~a~~ 177 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9997699799991707899598999999999